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Updated: Jul 13, 2025

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Relationship between gut microbiota dysbiosis and immune indicator in children with sepsis
Xia Lin1,2,3, Mohnad Abdalla1,2,3, Junjie Yang4
1Children's Hospital Affiliated to Shandong University, Jinan, 250022, China.
Insights
Children with sepsis show gut bacteria changes and immune system dysfunction. Specific bacteria correlate with immune markers, suggesting a link between gut health and sepsis severity.
Area of Science:
- Microbiology
- Immunology
- Pediatrics
Background:
- Sepsis is a critical condition involving immune system dysregulation due to infection.
- The relationship between gut microbiota alterations and immune indicators in pediatric sepsis is not well understood.
Purpose of the Study:
- To investigate the correlation between gut microbiota dysbiosis and immune indicators in children with sepsis.
- To identify potential bacterial biomarkers for sepsis diagnosis and prognosis.
Main Methods:
- 16S rDNA sequencing of fecal samples from 30 children with sepsis and 25 controls.
- Analysis of immune indicators including T cell subsets, NK cells, cytokines, and immunoglobulins.
- Correlation analysis between gut bacteria and immune markers, and evaluation of biomarker discriminatory power.
Main Results:
- Sepsis patients exhibited gut bacterial dysbiosis and reduced alpha diversity.
- Specific bacteria like Rhodococcus erythropolis, Klebsiella pneumoniae, Streptococcus mitis, Bacteroides uniformis, and Eubacterium eligens showed significant correlations with various immune markers (IFN-γ, CD3+ T cells, NK cells, IgM, IL-4, CD3+CD8+ T cells).
- Identified bacterial biomarkers demonstrated strong clinical discriminatory power.
Conclusions:
- Gut microbiota dysbiosis is associated with immunologic dysfunction in pediatric sepsis.
- Bacterial biomarkers identified may aid in understanding sepsis development and exacerbation.
- Further large-scale studies are needed to validate these findings.
Abstract:
Sepsis is a life-threatening multiple-organ injury caused by disordered host immune response to microbial infection. However, the correlation between gut microbiota dysbiosis and immune indicators remains unexplored. To address this gap in knowledge, we carried out 16 S rDNA sequencing, analyzed clinical fecal samples from children with sepsis (n = 30) and control children (n = 25), and obtained immune indicators, including T cell subtypes (CD3+, CD3+CD4+, CD3+CD8+, and CD4/CD8), NK cells, cytokines (IL-2, IL-4, IL-6, IL-10, TNF-α and IFN-γ), and immunoglobulin indices (IgA, IgE, IgM and IgG). In addition, we analyzed the correlation between gut microbiota dysbiosis and immune indicators, and evaluated the clinical discriminatory power of discovered bacterial biomarkers. We found that children with sepsis exhibited gut bacterial dysbiosis and low alpha diversity. The Spearman's rank correlation coefficient suggested that Rhodococcus erythropolis had a significantly positive correlation with IFN-γ and CD3+ T cells. Klebsiella pneumoniae and Streptococcus mitis were significantly correlated with NK cells. Bacteroides uniformis was significantly positively correlated with IgM and erythrocyte sedimentation rate, and Eubacterium eligens was significantly positively correlated with IL-4 and CD3+CD8+ T cells. The biomarkers discovered in this study had strong discriminatory power. These changes in the gut microbiome may be closely related to immunologic dysfunction and to the development or exacerbation of sepsis. However, a large sample size is required for verification.
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