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Calibrating machine learning approaches for probability estimation: A comprehensive comparison.

Francisco M Ojeda1,2, Max L Jansen3, Alexandre Thiéry3

  • 1Department of Cardiology, University Heart and Vascular Center Hamburg, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

Statistics in Medicine
|October 18, 2023
PubMed
Summary
This summary is machine-generated.

Statistical prediction models require calibration for new populations. Regression-based methods, especially logistic and beta calibration on transformed probabilities, offer the best performance for accurate probability estimates.

Keywords:
calibrationlogistic regressionmachine learningprobability estimationprobability machineupdating

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Area of Science:

  • Statistics
  • Machine Learning
  • Biostatistics

Background:

  • Statistical prediction models are increasingly used in research.
  • Transferring models to new populations presents challenges due to structural differences.
  • Calibration techniques adapt models to target populations, but many methods exist.

Approach:

  • Systematic evaluation of popular calibration approaches for two-class probability estimation.
  • Literature review and comprehensive simulation study comparing methods.
  • Assessment of empirical properties, generalizability, and software availability.

Key Points:

  • Logistic and beta calibration demonstrated superior performance in simulations.
  • Calibration on logit-transformed probabilities generally outperformed non-transformed methods.
  • Regression-based calibration with transformed probabilities and estimated slopes is recommended.

Conclusions:

  • Regression-based calibration, particularly using transformed probabilities with estimated slopes, is effective for updating probability estimates in validation studies.
  • The choice between re-estimating the entire model versus calibration depends on structural differences and validation data sample size.
  • This study provides practical code for real-world application by researchers.