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Cyclone: open-source package for simulation and analysis of finite dynamical systems.

Elena S Dimitrova1, Adam C Knapp2, Brandilyn Stigler3

  • 1Mathematics Department, California Polytechnic State University, San Luis Obispo, CA 93407, United States.

Bioinformatics (Oxford, England)
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Summary

Cyclone is a new software package that simulates the complete state space for finite dynamical systems. It handles function-based models over any finite set, offering a novel computational approach.

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Area of Science:

  • Computational Biology
  • Systems Biology
  • Dynamical Systems Theory

Background:

  • Existing software analyzes multi-state models but lacks comprehensive state space computation for function-based models.
  • Finite dynamical systems are crucial for modeling biological networks and other complex systems.

Purpose of the Study:

  • To introduce Cyclone, a software package for simulating the complete state space of function-based finite dynamical systems.
  • To provide a tool that overcomes limitations of existing software in state space analysis.

Main Methods:

  • Cyclone simulates the complete state space for any finite dynamical system.
  • The software is designed to be light-weight and easy to use for function-based models over finite sets.

Main Results:

  • Cyclone successfully computes the complete state space for function-based finite dynamical systems.
  • The package offers a unified approach for analyzing diverse multi-state models.

Conclusions:

  • Cyclone provides a valuable computational tool for researchers studying finite dynamical systems.
  • The software enhances the analysis of complex systems by enabling complete state space simulation.