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Updated: Jul 12, 2025

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Inferring population dynamics in macaque cortex.

Ganga Meghanath1, Bryan Jimenez1, Joseph G Makin1

  • 1Elmore Family School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, United States of America.

Journal of Neural Engineering
|October 24, 2023
PubMed
Summary
This summary is machine-generated.

Recurrent neural networks (RNNs) excel at modeling neural population dynamics, outperforming other models on a benchmark task. A novel hybrid architecture combining RNNs with self-attention further enhances performance in predicting neural activity.

Keywords:
RNNsmotor cortexmultielectrode arraysneural latents benchmarkneural population dynamicsself-attentionspiking data

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Area of Science:

  • Computational Neuroscience
  • Machine Learning
  • Neural Engineering

Background:

  • Multi-unit cortical recordings have increased, driving interest in neural population dynamics.
  • Modeling neural population dynamics requires inferring unobserved neuron activity and predicting future states.
  • A benchmark was established using macaque cortex neural recordings during motor tasks.

Purpose of the Study:

  • To evaluate general-purpose recurrent neural networks (RNNs) against specialized models for neural population dynamics.
  • To introduce a novel hybrid architecture (TERN) combining RNNs with self-attention for improved performance.
  • To establish the state-of-the-art performance on the neural latents benchmark.

Main Methods:

  • Utilized recurrent neural networks (RNNs) with masking for discriminative learning.
  • Developed a novel hybrid architecture (TERN) augmenting RNNs with self-attention mechanisms.
  • Evaluated models on four benchmark datasets of macaque cortical neural recordings.

Main Results:

  • RNNs trained with masking outperformed all previously published models on all four benchmark datasets.
  • The TERN hybrid architecture demonstrated further performance improvements.
  • Pure transformer models did not achieve comparable performance levels.

Conclusions:

  • The autoregressive bias inherent in RNNs is crucial for achieving peak performance in modeling neural population dynamics.
  • The study establishes a new state-of-the-art on the neural latents benchmark.
  • The authors propose augmenting the benchmark to include evaluations favoring generative models.