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Updated: Jul 12, 2025

Oral Biofilm Sampling for Microbiome Analysis in Healthy Children
Published on: December 31, 2017
Longitudinal Microbiome Changes in Supragingival Biofilm Transcriptomes Induced by Orthodontics.
E Babikow1, N Ghaltakhchyan1,2, T Livingston1,3
1Orthodontics Group, Division of Craniofacial and Surgical Care, Adams School of Dentistry, University of North Carolina, Chapel Hill, NC, USA.
Orthodontic treatment with braces alters the oral microbiome, increasing harmful bacteria and decreasing beneficial ones. This leads to poorer oral health over time, highlighting the need for further research into microbial shifts during treatment.
Area of Science:
- Oral microbiome research
- Microbial transcriptomics
- Longitudinal cohort studies
Background:
- Oral diseases are linked to dysbiosis in the supragingival microbiome.
- Most current associations are from cross-sectional studies, limiting understanding of temporal changes.
- Orthodontic treatment offers a unique prospective model to study these changes.
Purpose of the Study:
- To prospectively examine longitudinal changes in the supragingival microbiome's composition and function during orthodontic treatment.
- To correlate microbial shifts with clinical measures of oral health.
- To identify specific microbial taxa associated with treatment-induced oral health changes.
Main Methods:
- Longitudinal cohort study of 24 adolescent orthodontic patients.
- Saliva and plaque samples collected pre-bonding and at 1, 6, and 12 weeks post-bonding.
- RNA sequencing of plaque and saliva for microbiome analysis; clinical indices (BOP, GI, PD, PI) recorded.
Main Results:
- Clinical oral health measures (GI, PI, PD) significantly worsened post-bonding.
- Health-associated species (e.g., Streptococcus sanguinis) decreased in relative abundance.
- Disease-associated taxa (e.g., Selenomonas sputigena, Leptotrichia wadei) increased; specific salivary taxa predicted future bleeding on probing.
Conclusions:
- Fixed orthodontic treatment induces significant longitudinal shifts in the supragingival microbiome.
- These shifts are characterized by an increase in pathogenic bacteria and a decrease in beneficial species.
- Findings provide insights into microbial dysbiosis during treatment and identify potential targets for future interventions.
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