An autosomal-dominant childhood-onset disorder associated with pathogenic variants in VCP
Annelise Y Mah-Som1, Jil Daw2, Diana Huynh3
1Genetics Training Program, Harvard Medical School and Brigham & Women's Hospital, Boston, MA 02115, USA; Division of Genetics and Genomic Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA.
Insights
Valosin-containing protein (VCP) gene variants cause a new neurodevelopmental disorder in children, distinct from adult-onset VCP proteinopathy. This research identifies novel VCP variants linked to developmental delay and intellectual disability.
Area of Science:
- Genetics
- Molecular Biology
- Neuroscience
Background:
- Valosin-containing protein (VCP) is an AAA+ ATPase crucial for ubiquitin-dependent cellular functions.
- Pathogenic VCP variants are linked to adult-onset multisystem proteinopathy (MSP), affecting muscles, bones, cognition, and motor neurons.
Purpose of the Study:
- To identify and characterize novel VCP variants associated with a childhood-onset neurodevelopmental disorder.
- To investigate the functional impact of these variants on VCP protein activity and cellular processes.
Main Methods:
- GeneMatcher was used to identify individuals with VCP variants.
- Trio exome sequencing and multigene panels were employed for variant identification.
- In vitro functional assays and in silico modeling assessed variant impact on VCP ATPase activity and protein function.
Main Results:
- Thirteen unrelated individuals with heterozygous VCP variants (12 de novo, 1 inherited) were identified.
- Variants included missense, in-frame deletions, frameshift, and splicing alterations.
- Functional studies revealed decreased or hyperactivated ATPase activity, and predicted haploinsufficiency, indicating loss-of-function mechanisms.
Conclusions:
- This study expands the known disease spectrum of VCP to include childhood-onset neurodevelopmental disorders.
- The findings highlight VCP as a significant gene in pediatric neurodevelopmental conditions.
- The identified variants provide insights into VCP-related disorders and potential therapeutic targets.
Abstract:
Valosin-containing protein (VCP) is an AAA+ ATPase that plays critical roles in multiple ubiquitin-dependent cellular processes. Dominant pathogenic variants in VCP are associated with adult-onset multisystem proteinopathy (MSP), which manifests as myopathy, bone disease, dementia, and/or motor neuron disease. Through GeneMatcher, we identified 13 unrelated individuals who harbor heterozygous VCP variants (12 de novo and 1 inherited) associated with a childhood-onset disorder characterized by developmental delay, intellectual disability, hypotonia, and macrocephaly. Trio exome sequencing or a multigene panel identified nine missense variants, two in-frame deletions, one frameshift, and one splicing variant. We performed in vitro functional studies and in silico modeling to investigate the impact of these variants on protein function. In contrast to MSP variants, most missense variants had decreased ATPase activity, and one caused hyperactivation. Other variants were predicted to cause haploinsufficiency, suggesting a loss-of-function mechanism. This cohort expands the spectrum of VCP-related disease to include neurodevelopmental disease presenting in childhood.
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