Related Experiment Video
Updated: Jul 12, 2025

Author Spotlight: Establishing a New Fluorescence-Based Protocol for In Vivo Mitochondrial Morphology Analysis in Parkinson's Disease
Published on: June 23, 2023
Mitochondrial Dysfunction in Dopaminergic Neurons Derived from Patients with LRRK2- and SNCA-Associated Genetic Forms
Anna S Vetchinova1, Marina R Kapkaeva1, Mikhail V Ivanov2
1Laboratory of Neurobiology and Tissue Engineering, Brain Science Institute, Research Center of Neurology, Moscow 125367, Russia.
Abstract:
Parkinson's disease (PD) is the second most common neurodegenerative disease. Some cases of PD may be caused by genetic factors, among which mutations in the LRRK2 and SNCA genes play an important role. To develop effective neuroprotective strategies for PD, it is important to diagnose the disease at the earliest stages of the neurodegenerative process. Therefore, the detection of diagnostic and prognostic markers of Parkinson's disease (PD) is an urgent medical need. Advances in induced pluripotent stem cell (iPSC) culture technology provide new opportunities for the search for new biomarkers of PD and its modeling in vitro. In our work, we used a new technology for multiplex profiling of gene expression using barcoding on the Nanostring platform to assess the activity of mitochondrial genes on iPSC-derived cultures of dopaminergic neurons obtained from patients with LRRK2- and SNCA-associated genetic forms PD and a healthy donor. Electron microscopy revealed ultrastructural changes in mitochondria in both LRRK2 and SNCA mutant cells, whereas mitochondria in cells from a healthy donor were normal. In a culture with the SNCA gene mutation, the ratio of the area occupied by mitochondria to the total area of the cytoplasm was significantly lower than in the control and in the line with the LRRK2 gene mutation. Transcriptome analysis of 105 mitochondria proteome genes using the Nanostring platform revealed differences between the diseased and normal cells in the activity of genes involved in respiratory complex function, the tricarboxylic acid cycle, ATP production, mitochondria-endoplasmic reticulum interaction, mitophagy, regulation of calcium concentration, and mitochondrial DNA replication.
Insights
Genetic mutations in LRRK2 and SNCA genes are linked to Parkinson's disease (PD). Mitochondrial gene activity and structure are altered in PD patient-derived cells, offering potential biomarkers for early diagnosis.
Area of Science:
- Neuroscience
- Genetics
- Cell Biology
Background:
- Parkinson's disease (PD) is a prevalent neurodegenerative disorder with genetic links, particularly mutations in LRRK2 and SNCA genes.
- Early diagnosis of PD is crucial for developing effective neuroprotective strategies, highlighting the need for reliable biomarkers.
- Induced pluripotent stem cell (iPSC) technology offers a powerful platform for modeling PD and discovering novel biomarkers in vitro.
Purpose of the Study:
- To investigate mitochondrial gene expression and ultrastructural changes in iPSC-derived dopaminergic neurons from patients with LRRK2- and SNCA-associated Parkinson's disease.
- To identify potential mitochondrial biomarkers for early diagnosis and prognosis of Parkinson's disease.
Main Methods:
- Utilized multiplex gene expression profiling with barcoding on the Nanostring platform to analyze 105 mitochondrial proteome genes.
- Employed electron microscopy to examine ultrastructural mitochondrial morphology in patient-derived iPSC cultures.
- Compared gene activity and mitochondrial morphology between iPSC-derived neurons from PD patients (LRRK2 and SNCA mutations) and healthy donors.
Main Results:
- Electron microscopy revealed ultrastructural mitochondrial abnormalities in both LRRK2 and SNCA mutant cells compared to healthy controls.
- SNCA-mutant cells showed a significantly reduced ratio of mitochondrial area to total cytoplasm area.
- Nanostring analysis identified differential gene expression in pathways including respiratory complexes, ATP production, mitochondria-endoplasmic reticulum interactions, mitophagy, calcium regulation, and mitochondrial DNA replication.
Conclusions:
- Mitochondrial dysfunction is a key feature in genetic forms of Parkinson's disease, evident at both the ultrastructural and gene expression levels.
- Altered mitochondrial gene activity in iPSC-derived neurons represents a promising avenue for identifying diagnostic and prognostic biomarkers for Parkinson's disease.
- This study underscores the potential of iPSC technology combined with advanced profiling techniques for understanding PD pathogenesis and biomarker discovery.
Related Concept Videos
Parkinson's Disease: Overview
Parkinson's Disease: Treatment
Parkinson's Disease is primarily a result of the loss of dopaminergic neurons in the substantia nigra pars compacta. The cornerstone of...
Lysosomal Hydrolases
Neural Regulation

