Related Experiment Video
Updated: Jul 12, 2025

Extracting Metrics for Three-dimensional Root Systems: Volume and Surface Analysis from In-soil X-ray Computed Tomography Data
Published on: April 26, 2016
Quantifying Soil Complexity Using Fisher Shannon Method on 3D X-ray Computed Tomography Scans
Domingos Aguiar1, Rômulo Simões Cezar Menezes2, Antonio Celso Dantas Antonino2
1Departamento de Estatística e Informática, Universidade Federal Rural de Pernambuco, Rua Dom Manoel de Medeiros s/n, Dois Irmãos, Recife 52171-900, PE, Brazil.
Abstract:
The conversion of native forest into agricultural land, which is common in many parts of the world, poses important questions regarding soil degradation, demanding further efforts to better understand the effect of land use change on soil functions. With the advent of 3D computed tomography techniques and computing power, new methods are becoming available to address this question. In this direction, in the current work we implement a modification of the Fisher-Shannon method, borrowed from information theory, to quantify the complexity of twelve 3D CT soil samples from a sugarcane plantation and twelve samples from a nearby native Atlantic forest in northeastern Brazil. The distinction found between the samples from the sugar plantation and the Atlantic forest site is quite pronounced. The results at the level of 91.7% accuracy were obtained considering the complexity in the Fisher-Shannon plane. Atlantic forest samples are found to be generally more complex than those from the sugar plantation.
More Related Videos
09:00Visualization of Failure and the Associated Grain-Scale Mechanical Behavior of Granular Soils under Shear using Synchrotron X-Ray Micro-Tomography
Published on: September 29, 2019
06:56Author Spotlight: Advancements in X-ray CT Tool Chain for Tree Core Analysis
Published on: September 22, 2023
Related Concept Videos
Computed Tomography
The technique was invented in the 1970s and is based on the principle that as X-rays pass through the body, they are absorbed or reflected at different levels. In the technique, a patient lies on a motorized platform while a computerized axial tomography (CAT) scanner rotates...
Electron Microscope Tomography and Single-particle Reconstruction
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...