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Updated: Jul 12, 2025

Free Radicals in Chemical Biology: from Chemical Behavior to Biomarker Development
Published on: April 15, 2013
Quantum Chemical Analysis of Molecular and Fragment Ions Produced by Field Ionization of Methyl Stearate
Mitsuo Takayama1, Masaaki Ubukata2, Kenji Nagatomo2
1Graduate School in Nanobioscience, Yokohama City University, 22-2 Seto, Kanazawa-ku, Yokohama 236-0027, Japan.
Abstract:
The formation of molecular and fragment ions observed in the field ionization mass spectrum of methyl stearate has been analyzed on the basis of quantum chemical calculations including time-dependent density functional theory (TDDFT) and natural bond orbital (NBO) analysis. The TDDFT calculations suggest that methyl stearate is ionized via two processes, namely a 7.43 eV excitation and a tunneling effect, while the high electric field of 1010 V/m enables analyte molecules to ionize at an effective 6 eV lower than the 9.26 eV ionization energy. The NBO analysis suggests that the abundances of aliphatic fragment ions [CH2]+ at m/z 29, 43, and 57 generated in the ionizing cell can be rationalized by hyperconjugation between the sigma (σ)-electrons of sp3 C-H bonds of methyl or methylene groups and the empty p-orbital of the carbocation -CH2+. The C4 periodic methyl ester fragment ions at m/z 115-269 and the complementary McLafferty rearrangement fragment ion at m/z 224 can be explained by metastable ion decay with rearrangement reactions in the ion source.
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