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Published on: June 4, 2021
NUScon: a community-driven platform for quantitative evaluation of nonuniform sampling in NMR
Yulia Pustovalova1, Frank Delaglio2, D Levi Craft1
1Department of Molecular Biology and Biophysics, UConn Health, Farmington, CT 06030, USA.
Nonuniform sampling (NUS) in NMR accelerates data collection and enhances spectral quality. The NUS Contest (NUScon) aims to establish best practices for processing NUS data by evaluating community workflows and developing objective quality criteria.
Area of Science:
- Nuclear Magnetic Resonance (NMR) Spectroscopy
- Computational Chemistry
- Data Science
Background:
- Nonuniform sampling (NUS) and non-Fourier spectral reconstruction in multidimensional NMR have gained prominence recently.
- NUS offers advantages in reducing data collection time and improving spectral resolution and sensitivity.
- Wider adoption is driven by computational advances, software availability, vendor support, and demands from higher magnetic fields.
Purpose of the Study:
- To address the unmet challenge of identifying best practices for processing and analyzing NUS experiments.
- To establish objective criteria for evaluating the quality of spectral reconstructions from NUS data.
- To foster community-driven development towards establishing best practices in NUS.
Main Methods:
- Initiation of the Nonuniform Sampling Contest (NUScon) for community-based assessment of NUS processing.
- Construction of challenge problems by injecting synthetic signals into NMR experiments.
- Processing of challenges using community-submitted workflows and quantitative analysis via a dedicated software package.
Main Results:
- Presentation of a software package for quantitative analysis of NUS data.
- Reporting of results from the first two rounds of NUScon.
- Identification of remaining challenges and a roadmap for future development.
Conclusions:
- NUScon is crucial for developing objective evaluation criteria for NUS spectral reconstructions.
- Community-driven efforts are essential for establishing best practices in the rapidly evolving field of NUS.
- The NUScon software and data are available on the NMRbox platform to support ongoing research.
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