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Updated: Jul 12, 2025

Visualizing Mitophagy with Fluorescent Dyes for Mitochondria and Lysosome
Published on: November 30, 2022
CKLF induces microglial activation via triggering defective mitophagy and mitochondrial dysfunction
Hongyun Wang1, Junrui Ye1, Ye Peng2
1State Key Laboratory of Bioactive Substances and Functions of Natural Medicines, Institute of Materia Medica & Neuroscience Center, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
Abstract:
Although microglial activation is induced by an increase in chemokines, the role of mitophagy in this process remains unclear. This study aimed to elucidate the role of microglial mitophagy in CKLF/CKLF1 (chemokine-like factor 1)-induced microglial activation and neuroinflammation, as well as the underlying molecular mechanisms following CKLF treatment. This study determined that CKLF, an inducible chemokine in the brain, leads to an increase in mitophagy markers, such as DNM1L, PINK1 (PTEN induced putative kinase 1), PRKN, and OPTN, along with a simultaneous increase in autophagosome formation, as evidenced by elevated levels of BECN1 and MAP1LC3B (microtubule-associated protein 1 light chain 3 beta)-II. However, SQSTM1, a substrate of autophagy, was also accumulated by CKLF treatment, suggesting that mitophagy flux was reduced and mitophagosomes accumulated. These findings were confirmed by transmission electron microscopy and confocal microscopy. The defective mitophagy observed in our study was caused by impaired lysosomal function, including mitophagosome-lysosome fusion, lysosome generation, and acidification, resulting in the accumulation of damaged mitochondria in microglial cells. Further analysis revealed that pharmacological blocking or gene-silencing of mitophagy inhibited CKLF-mediated microglial activation, as evidenced by the expression of the microglial marker AIF1 (allograft inflammatory factor 1) and the mRNA of proinflammatory cytokines (Tnf and Il6). Ultimately, defective mitophagy induced by CKLF results in microglial activation, as observed in the brains of adult mice. In summary, CKLF induces defective mitophagy, microglial activation, and inflammation, providing a potential approach for treating neuroinflammatory diseases.Abbreviation: 3-MA: 3-methyladenine; AIF1: allograft inflammatory factor 1; ANOVA: analysis of variance; BAF: bafilomycin A1; BSA: bovine serum albumin; CCCP: carbonyl cyanide m-chlorophenyl hydrazone; cGAMP: cyclic GMP-AMP; CGAS: cyclic GMP-AMP synthase; CKLF/CKLF1: chemokine-like factor 1; CNS: central nervous system; DMEM: Dulbecco's Modified Eagle Medium; DNM1L: dynamin 1 like; GAPDH: glyceraldehyde-3-phosphate dehydrogenase; GFP: green fluorescence protein; IRF3: interferon regulatory factor 3; IgG: immunoglobulin G; LAMP1: lysosomal-associated membrane protein 1; LAPTM4A: lysosomal-associated protein transmembrane 4A; MAP1LC3B: microtubule-associated protein 1 light chain 3 beta; Mdivi-1: mitochondrial division inhibitor 1; mRFP: monomeric red fluorescent protein; mtDNA: mitochondrial DNA; MTORC1: mechanistic target of rapamycin kinase complex 1; OPTN: optineurin; PBS: phosphate-buffered saline; PCR: polymerase chain reaction; PINK1: PTEN induced putative kinase 1; PLL: poly-L-lysine; PRKN: parkin RBR E3 ubiquitin protein ligase; qPCR: quantitative polymerase chain reaction; ROS: reactive oxygen species; SQSTM1: sequestosome 1; TBK1: TANK-binding kinase 1; TFEB: transcription factor EB; VDAC: voltage-dependent anion channel.
Insights
Chemokine-like factor 1 (CKLF1) impairs mitophagy in microglia, leading to activation and neuroinflammation. Targeting this defective mitophagy offers a potential therapeutic strategy for brain inflammation.
Area of Science:
- Neuroscience
- Immunology
- Cell Biology
Background:
- Microglial activation is a key component of neuroinflammation, often triggered by chemokines.
- The specific role of mitophagy, the selective degradation of mitochondria via autophagy, in microglial activation remains poorly understood.
- Chemokine-like factor 1 (CKLF1) is an inducible chemokine found in the brain.
Purpose of the Study:
- To investigate the role of microglial mitophagy in CKLF1-induced microglial activation and neuroinflammation.
- To elucidate the molecular mechanisms underlying CKLF1's effects on mitophagy in microglia.
Main Methods:
- Analysis of mitophagy markers (DNM1L, PINK1, PRKN, OPTN) and autophagosome formation markers (BECN1, MAP1LC3B-II) in microglia following CKLF1 treatment.
- Assessment of mitophagy flux using SQSTM1 accumulation and confirmation via transmission electron microscopy and confocal microscopy.
- Evaluation of lysosomal function, including fusion, generation, and acidification.
- Pharmacological and gene-silencing approaches to block mitophagy and assess CKLF1-mediated microglial activation (AIF1 expression, Tnf and Il6 mRNA levels).
Main Results:
- CKLF1 treatment increased mitophagy markers and autophagosome formation but led to SQSTM1 accumulation, indicating reduced mitophagy flux and mitophagosome buildup.
- Impaired lysosomal function (impaired fusion, reduced generation, and acidification) was observed, causing damaged mitochondria accumulation in microglia.
- Blocking or silencing mitophagy inhibited CKLF1-induced microglial activation and pro-inflammatory cytokine production.
Conclusions:
- CKLF1 induces defective mitophagy in microglia by impairing lysosomal function, leading to mitochondrial accumulation.
- This defective mitophagy is a key driver of CKLF1-mediated microglial activation and subsequent neuroinflammation.
- Targeting CKLF1-induced mitophagy defects presents a potential therapeutic avenue for neuroinflammatory diseases.

