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Using Caenorhabditis elegans as a Model System to Study Protein Homeostasis in a Multicellular Organism
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Proteostasis governs differential temperature sensitivity across embryonic cell types.

Michael W Dorrity1, Lauren M Saunders2, Madeleine Duran2

  • 1Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA; Structural and Computational Biology, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.

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|November 10, 2023
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Temperature stress disrupts embryonic development by affecting cell proportions and gene expression. Zebrafish sheath cells in the notochord are particularly sensitive, leading to developmental defects.

Keywords:
developmental robustnesssingle-cell RNA-seqvariabilityzebrafish

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Area of Science:

  • Developmental biology
  • Genomics
  • Stress biology

Background:

  • Embryonic development exhibits robustness but can be compromised by environmental stressors like temperature.
  • Specific cell types display varying sensitivity to stress, yet the underlying mechanisms remain unclear.

Purpose of the Study:

  • To identify cell types and molecular pathways responsible for phenotypic variability in zebrafish embryos under temperature stress.
  • To investigate the cellular and molecular basis of temperature sensitivity during embryonic development.

Main Methods:

  • Whole-animal single-cell RNA sequencing (scRNA-seq) was employed on hundreds of individual zebrafish embryos exposed to temperature stress.
  • Analysis focused on identifying perturbed cell type proportions, altered gene expression programs, and developmental timing asynchrony.

Main Results:

  • Temperature stress altered cell type proportions and gene expression profiles across numerous cell types.
  • Developmental timing became asynchronous under thermal stress.
  • Notochord sheath cells were identified as particularly temperature-sensitive, accumulating misfolded proteins and causing structural notochord failure and anatomical defects.

Conclusions:

  • Whole-animal scRNA-seq is a powerful approach to uncover mechanisms of developmental robustness and identify critical cellular failure points.
  • Notochord sheath cell sensitivity to temperature-induced protein misfolding represents a key vulnerability in embryonic development.