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Updated: Jul 11, 2025

Time-Resolved Fluorescence Anisotropy from Single Molecules for Characterizing Local Flexibility in Biomolecules
Published on: April 25, 2025
Multimode vibrational dynamics and orientational effects in fluorescence-encoded infrared spectroscopy. I. Response
Lukas Whaley-Mayda1, Abhirup Guha1, Andrei Tokmakoff1
1Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA.
This study introduces a theoretical framework for fluorescence-encoded infrared (FEIR) spectroscopy, enabling single-molecule vibrational analysis. It details how vibrational coherence and molecular orientation influence FEIR spectra, aiding data interpretation.
Area of Science:
- Chemical Physics
- Spectroscopy
- Molecular Dynamics
Background:
- Fluorescence-encoded infrared (FEIR) spectroscopy is an emerging technique for high-sensitivity vibrational spectroscopy in solution.
- FEIR experiments utilize ultrashort pulses for time-resolved excitation of electronic and vibrational transitions.
- The technique is sensitive to ground-state vibrational dynamics, vibronic coupling, and transition dipole orientations.
Purpose of the Study:
- To develop a theoretical treatment of FEIR spectroscopy for understanding complex molecular phenomena.
- To describe Fourier-transform FEIR experiments using a nonlinear response function for a two-level electronic system coupled to vibrations.
- To interpret experimental FEIR measurements by analyzing vibrational coherence and orientational effects.
Main Methods:
- Development of a nonlinear response function for Fourier-transform FEIR spectroscopy.
- Theoretical modeling of a two-level electronic system coupled to multiple vibrations.
- Analysis of vibrational coherence, population response, and orientational contributions to the spectra.
Main Results:
- Vibrational coherence between modes creates oscillatory features that distort FEIR spectra.
- The interference patterns depend on the relative signs of Franck-Condon wavefunction overlaps.
- Polarization-dependent experiments can extract information on relative transition dipole angles.
Conclusions:
- The theoretical framework provides a comprehensive understanding of FEIR spectroscopic information.
- The study aids in interpreting experimental data and optimizing FEIR experimental design.
- This work establishes a foundation for advanced applications of FEIR spectroscopy in molecular science.
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