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Updated: Jul 11, 2025

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A Bioinformatics Pipeline for Investigating Molecular Evolution and Gene Expression using RNA-seq
Published on: May 28, 2021
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An improved gene expression programming algorithm for function mining of map-reduce job execution in catenary
Jin Ding1, Tianyu Jiang1, Ping Tan1
1School of Automation and Electrical Engineering, Zhejiang University of Science and Technology, Hangzhou, China.
Plos One
|November 16, 2023
Summary
A new multi-strategy Gene Expression Programming (MS-GEP) algorithm improves function mining accuracy for high-speed railway systems. This novel approach enhances map-reduce job efficiency by avoiding local optima and increasing population diversity.
Area of Science:
- Computational Intelligence
- Machine Learning
- Data Mining
Background:
- Gene Expression Programming (GEP) is a key algorithm in function mining.
- Accurate function models are crucial for optimizing configuration parameters-execution efficiency (CP-EE) in map-reduce jobs, particularly for high-speed railway catenary monitoring systems.
Purpose of the Study:
- To develop a novel algorithm, Multi-Strategy Gene Expression Programming (MS-GEP), for more accurate function modeling in CP-EE.
- To enhance GEP's ability to escape premature convergence and local optima.
Main Methods:
- The MS-GEP algorithm incorporates an adaptive mutation rate based on evolutionary generations, population diversity, and fitness values.
- A manual intervention strategy identifies and addresses local optima based on evolutionary stagnation.
- Population diversity is managed through random individual replacement and ancestral population tracing to alter evolutionary direction.
Main Results:
- MS-GEP demonstrated superior solution quality and increased population diversity compared to traditional GEP algorithms on benchmark function mining tasks.
- The algorithm achieved higher accuracy in modeling the CP-EE of high-speed railway catenary monitoring systems.
Conclusions:
- MS-GEP offers significant improvements over standard GEP for function mining tasks.
- The proposed strategies effectively prevent local optima and enhance overall model accuracy, showing promise for complex system optimization.
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