Related Experiment Video
Updated: Jul 10, 2025

Preparation of the Mgm101 Recombination Protein by MBP-based Tagging Strategy
Published on: June 25, 2013
Protocol for an agent-based model of recombination in bacteria playing a public goods game
Isaiah Paolo A Lee1, Omar Tonsi Eldakar2, J Peter Gogarten3
1Department of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, NH 03824, USA; National Institute of Molecular Biology and Biotechnology, University of the Philippines, Diliman 1101, Philippines.
Abstract:
Agent-based models are composed of individual agents coded for traits, such as cooperation and cheating, that interact in a virtual world based on defined rules. Here, we describe the use of an agent-based model of homologous recombination in bacteria playing a public goods game. We describe steps for software installation, setting model parameters, running and testing models, and visualization and statistical analysis. This protocol is useful in analyses of horizontal gene transfer, bacterial sociobiology, and game theory. For complete details on the use and execution of this protocol, please refer to Lee et al.1.
More Related Videos
Related Concept Videos
Conservative Site-specific Recombination and Phase Variation
The recognition sites for Cre recombinase called LoxP...
Viral Recombination
Gene Conversion
Coordination of Gene Expression Processes in Bacteria
Exon Recombination
Exon shuffling follows “splice frame rules.” Each exon...
Genome Size and the Evolution of New Genes

