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Construction of full-atomistic polymer amorphous structures using reverse-mapping from Kremer-Grest models
Hiroya Nitta1, Taku Ozawa1, Kenji Yasuoka2
1JSOL Corporation, KUDAN-KAIKAN TERRACE 1-6-5, Kudanminami, Chiyoda-ku, Tokyo 102-0074, Japan.
The Journal of Chemical Physics
|November 20, 2023
Summary
We developed a new method to build detailed full-atomistic (FA) amorphous polymer structures from coarse-grained (CG) models. This efficient scheme accurately reproduces polymer chain structures, enabling the generation of complex polymer models.
Area of Science:
- Polymer Science
- Computational Chemistry
- Materials Science
Background:
- Accurate construction of amorphous polymer structures is crucial for understanding material properties.
- Existing methods for generating full-atomistic (FA) polymer models can be computationally intensive and complex.
- Coarse-grained (CG) models offer a computationally efficient way to explore large-scale polymer behavior.
Purpose of the Study:
- To develop an efficient and accurate method for constructing full-atomistic (FA) amorphous polymer structures.
- To establish a sequential reverse-mapping strategy from abstract coarse-grained (CG) models to detailed FA models.
- To validate the proposed method by comparing generated structures with results from traditional FA molecular dynamics (MD) simulations.
Main Methods:
- Utilized a three-level modeling approach: CG1 (e.g., Kremer-Grest model), CG2 (monomer-level CG model), and FA model.
- Employed sequential reverse-mapping procedures: CG1 -> CG2 -> FA.
- Developed a specific mapping relation to ensure accurate density and chain radius in the FA model.
- Applied the scheme to polyethylene (PE), cis 1,4-polybutadiene (PB), and poly(methyl methacrylate) (PMMA).
Main Results:
- The developed scheme successfully constructed FA amorphous polymer structures for PE, PB, and PMMA.
- Validation against long-time FA MD simulations showed excellent agreement in both short- and long-range chain structures for PE and PB.
- The method efficiently generated an entangled PMMA structure, demonstrating its applicability to complex systems.
Conclusions:
- The proposed reverse-mapping method provides an efficient and accessible approach for building full-atomistic amorphous polymer structures.
- This technique bridges the gap between computationally efficient CG models and detailed FA representations.
- The validated scheme facilitates the generation of complex polymer architectures for further simulation and analysis.
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