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Updated: Jul 10, 2025

Proofreading and DNA Repair Assay Using Single Nucleotide Extension and MALDI-TOF Mass Spectrometry Analysis
Published on: June 19, 2018
The accurate bypass of pyrimidine dimers by DNA polymerase eta contributes to ultraviolet-induced mutagenesis
C F M Menck1, R S Galhardo1, A Quinet2
1Department of Microbiology, Institute of Biomedical Sciences, University of São Paulo (USP), São Paulo, SP, Brazil.
Abstract:
Human xeroderma pigmentosum variant (XP-V) patients are mutated in the POLH gene, responsible for encoding the translesion synthesis (TLS) DNA polymerase eta (Pol eta). These patients suffer from a high frequency of skin tumors. Despite several decades of research, studies on Pol eta still offer an intriguing paradox: How does this error-prone polymerase suppress mutations? This review examines recent evidence suggesting that cyclobutane pyrimidine dimers (CPDs) are instructional for Pol eta. Consequently, it can accurately replicate these lesions, and the mutagenic effects induced by UV radiation stem from the deamination of C-containing CPDs. In this model, the deamination of C (forming a U) within CPDs leads to the correct insertion of an A opposite to the deaminated C (or U)-containing dimers. This intricate process results in C>T transitions, which represent the most prevalent mutations detected in skin cancers. Finally, the delayed replication in XP-V cells amplifies the process of C-deamination in CPDs and increases the burden of C>T mutations prevalent in XP-V tumors through the activity of backup TLS polymerases.
Insights
DNA polymerase eta (Pol eta), crucial for repairing UV damage, paradoxically suppresses mutations by accurately replicating cyclobutane pyrimidine dimers (CPDs). UV-induced C>T transitions in skin cancer arise from CPD deamination and backup polymerase activity in xeroderma pigmentosum variant cells.
Area of Science:
- Molecular Biology
- Genetics
- Dermatology
Background:
- Xeroderma pigmentosum variant (XP-V) is linked to mutations in the POLH gene, encoding translesion synthesis (TLS) DNA polymerase eta (Pol eta).
- XP-V patients exhibit a high incidence of skin tumors, yet the precise role of Pol eta in mutation suppression remains paradoxical.
- Understanding Pol eta's function is critical for explaining UV-induced mutagenesis and skin cancer development.
Purpose of the Study:
- To review recent evidence on how DNA polymerase eta (Pol eta) suppresses mutations despite its error-prone nature.
- To elucidate the mechanism by which UV radiation leads to C>T transitions, the predominant mutations in skin cancers.
- To explain the increased C>T mutation burden in XP-V tumors.
Main Methods:
- Review of existing scientific literature and research findings on Pol eta function.
- Analysis of the proposed model involving cyclobutane pyrimidine dimers (CPDs) and DNA polymerase activity.
- Examination of the role of deamination and backup TLS polymerases in XP-V cells.
Main Results:
- Cyclobutane pyrimidine dimers (CPDs) act as instructional templates for Pol eta, enabling accurate lesion replication.
- UV-induced mutagenic effects originate from the deamination of cytosine (C) within CPDs, leading to C>T transitions.
- Delayed replication in XP-V cells enhances C-deamination and C>T mutations via backup TLS polymerases.
Conclusions:
- Pol eta's accurate replication of CPDs contributes to mutation suppression, challenging the notion of it being solely error-prone.
- Cytosine deamination within CPDs is a key driver of C>T mutations in UV-exposed skin, particularly in XP-V.
- The interplay between Pol eta, deamination, and backup TLS polymerases dictates the mutation spectrum in XP-V and skin cancer.
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