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Updated: Jul 10, 2025

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Analysis of Craniomaxillofacial Malformations in Mice Using Three-dimensional Microcomputed Tomography
Published on: January 17, 2025
301
Three-dimensional analysis of reconstructed skulls using three different open-source software versus commercial
Johari Yap Abdullah1, Abdul Manaf Abdullah2, Syafawati Zaim1
1School of Dental Sciences, Universiti Sains Malaysia, Kelantan, Malaysia.
Summary
Open-source software like MITK, 3D Slicer, and InVesalius offer comparable 3D skull model reconstruction to commercial software. These tools provide cost-effective alternatives for medical imaging and surgical planning.
Area of Science:
- Medical Imaging
- Computational Anatomy
- Biomedical Engineering
Background:
- Accurate 3D skull reconstruction is crucial for cranio-maxillofacial surgery and patient management.
- Commercial software provides a gold standard but can be expensive for some institutions.
- Evaluating open-source alternatives is essential for accessible medical technology.
Purpose of the Study:
- To compare the accuracy of 3D skull models reconstructed using three open-source software packages against a commercial standard.
- To assess the geometric similarity and reliability of open-source 3D reconstruction tools.
Main Methods:
- 58 subjects' CT images were used to reconstruct 3D skull models.
- Three open-source software (MITK, 3D Slicer, InVesalius) and one commercial software (Mimics) were utilized.
- Models were superimposed and analyzed using Hausdorff distance and Dice similarity coefficient.
Main Results:
- Open-source software showed high similarity to the commercial standard (Mimics).
- Hausdorff distances were 0.25 mm (Mimics vs. MITK) and 0.01 mm (Mimics vs. 3D Slicer/InVesalius).
- Dice similarity coefficients were 94.1% (MITK), 98.8% (3D Slicer), and 98.3% (InVesalius).
Conclusions:
- MITK, 3D Slicer, and InVesalius provide comparable 3D skull reconstruction accuracy to commercial software.
- These open-source options are viable for pre-operative planning in cranio-maxillofacial cases.
- Cost-effective open-source software can enhance patient management in resource-limited settings.

