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Updated: Jun 18, 2026

The Ex Vivo Culture and Pattern Recognition Receptor Stimulation of Mouse Intestinal Organoids
Published on: May 18, 2016
Detecting host responses to microbial stimulation using primary epithelial organoids.
Jette Bornholdt1,2,3, Christina V Müller1, Maria Juul Nielsen1
1Biotech Research and Innovation Centre, University of Copenhagen, Copenhagen, Denmark.
Healthy intestinal organoids show distinct responses to probiotic bacteria, unlike cancer cell lines. This research highlights organoids as a better model for studying host-microbe interactions.
Area of Science:
- Microbiology
- Gastroenterology
- Cell Biology
Background:
- The intestinal epithelium interacts with luminal microbes.
- Cancer-derived cell lines (e.g., Caco-2) are traditionally used to study these interactions.
- It remains unclear if these cell lines accurately represent normal epithelial responses and strain-specific microbial effects.
Purpose of the Study:
- To investigate microbial responses in normal intestinal epithelium using organoids.
- To compare responses between healthy organoids and Caco-2 cell lines.
- To identify common and strain-specific microbial interactions.
Main Methods:
- Derived intestinal organoids from healthy individuals (n=9).
- Cultured organoids on a laminin matrix to induce differentiation and apical exposure.
- Exposed differentiated organoids to probiotic bacterial strains (BB-12®, LGG®, DSM33361, Bif195).
- Performed parallel experiments using Caco-2 cell lines.
Main Results:
- Healthy intestinal organoids exhibited robust acute responses to various probiotic strains.
- Both common and strain-specific responses were observed across individuals.
- Caco-2 cell lines showed no acute response to the tested probiotics.
- Organoid models revealed individual variability in microbial responses.
Conclusions:
- Primary intestinal organoids from healthy individuals are a valuable model for studying host-microbe interactions.
- Organoids provide a more accurate representation of normal epithelial responses compared to Caco-2 cells.
- This approach enhances understanding of individual variations in host-microbe dynamics and microbial strain specificity.
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