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A Repertoire of the Less Common Clinical Yeasts
Estelle Menu1,2, Quentin Filori3, Jean-Charles Dufour3,4
1Laboratoire de Parasitologie-Mycologie, IHU Méditerranée Infection, 13385 Marseille, France.
Abstract:
Invasive fungal diseases are a public health problem. They affect a constantly increasing number of at-risk patients, and their incidence has risen in recent years. These opportunistic infections are mainly due to Candida sp. but less common or rare yeast infections should not be underestimated. These so-called "less common" yeasts include Ascomycota of the genera Candida (excluding the five major Candida species), Magnusiomyces/Saprochaete, Malassezia, and Saccharomyces, and Basidiomycota of the genera Cryptococcus (excluding the Cryptococcus neoformans/gattii complex members), Rhodotorula, and Trichosporon. The aim of this review is to (i) inventory the less common yeasts isolated in humans, (ii) provide details regarding the specific anatomical locations where they have been detected and the clinical characteristics of the resulting infections, and (iii) provide an update on yeast taxonomy. Of the total of 239,890 fungal taxa and their associated synonyms sourced from the MycoBank and NCBI Taxonomy databases, we successfully identified 192 yeasts, including 127 Ascomycota and 65 Basidiomycota. This repertoire allows us to highlight rare yeasts and their tropism for certain anatomical sites and will provide an additional tool for diagnostic management.
Insights
This review inventories less common yeasts causing human infections, detailing their locations and clinical features. It updates yeast taxonomy, aiding in the diagnosis of rare fungal diseases.
Area of Science:
- Medical Mycology
- Clinical Microbiology
- Yeast Taxonomy
Background:
- Invasive fungal diseases pose a growing public health challenge, particularly in immunocompromised patients.
- While Candida species are common culprits, less common yeasts are increasingly recognized as opportunistic pathogens.
- These less common yeasts include specific genera within Ascomycota and Basidiomycota.
Purpose of the Study:
- To catalog human-pathogenic yeasts beyond the major Candida species.
- To describe the anatomical sites and clinical presentations associated with infections caused by these less common yeasts.
- To provide an updated classification of relevant yeast species.
Main Methods:
- Systematic literature review and database mining (MycoBank, NCBI Taxonomy).
- Identification and classification of fungal taxa associated with human infections.
- Analysis of reported yeast isolation sites and clinical characteristics.
Main Results:
- A comprehensive list of 192 less common yeast species (127 Ascomycota, 65 Basidiomycota) isolated from humans was compiled.
- Specific anatomical tropisms and clinical manifestations for these yeasts were detailed.
- An updated taxonomic overview of these clinically relevant yeasts was established.
Conclusions:
- Less common yeasts represent a significant, often underestimated, group of human pathogens.
- Understanding their distribution and clinical relevance is crucial for accurate diagnosis and management.
- This work serves as a valuable resource for diagnostic laboratories and clinicians managing invasive fungal infections.
Related Concept Videos
Overview of Fungi
Fungal Group Zygomycota
Fungal Phylum Microsporidia
Fungal Phylum Ascomycota
Candidiasis
Antifungal Agents

