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A transferable double exponential potential for condensed phase simulations of small molecules
Joshua T Horton1, Simon Boothroyd2, Pavan Kumar Behara3
1School of Natural and Environmental Sciences, Newcastle University Newcastle upon Tyne NE1 7RU UK daniel.cole@ncl.ac.uk.
A new framework, Smirnoff-plugins, enables custom force field functional forms, improving molecular modeling. This double exponential force field outperforms Lennard-Jones potentials in condensed phase property predictions.
Area of Science:
- Computational Chemistry
- Molecular Modeling
- Physical Chemistry
Background:
- The Lennard-Jones potential is a legacy function for non-bonded interactions in molecular modeling.
- Its persistence is due to computational limitations and the high cost of rewriting software and retraining force fields.
Purpose of the Study:
- Introduce Smirnoff-plugins, a flexible framework to extend the Open Force Field software stack.
- Enable the use of custom force field functional forms beyond the Lennard-Jones potential.
- Train and evaluate a novel transferable small molecule force field.
Main Methods:
- Developed Smirnoff-plugins to allow custom functional forms within the Open Force Field software.
- Utilized an automated infrastructure to train a new force field based on a double exponential form.
- Trained on over 1000 experimental condensed phase properties.
Main Results:
- The new double exponential force field demonstrates improved transfer free energies.
- Achieved acceptable conformational energetics, run times, and convergence properties.
- Outperformed state-of-the-art Lennard-Jones based force fields in key metrics.
Conclusions:
- Smirnoff-plugins provide a flexible solution for incorporating novel functional forms in molecular modeling.
- The developed double exponential force field offers a promising alternative to Lennard-Jones potentials.
- This work facilitates the development of more accurate and efficient molecular force fields.
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