Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Protein Dynamics in Living Cells01:19

Protein Dynamics in Living Cells

2.1K
Different fluorescence-based techniques are used to study the protein dynamics in living cells. These techniques include FRAP, FRET, and PET.
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
2.1K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

High-throughput identification of bacterial β-glucuronidase inhibitors using machine learning.

Gut microbes·2026
Same author

GbWRKY11 Enhances Verticillium Wilt Resistance Through Activating Jasmonic Acid Biosynthesis in Cotton.

Molecular plant pathology·2026
Same author

Artificial intelligence-enabled personalisation of oral drug delivery: From data-driven design to on-demand manufacturing.

Advanced drug delivery reviews·2026
Same author

Impact of tissue staining and scanner variation on the performance of pathology foundation models: a study of sarcomas and their mimics.

The journal of pathology. Clinical research·2026
Same author

Fluorescence recovery in the super-resolution regime reveals subcompartments of 53BP1 foci.

Cell reports methods·2025
Same author

HFD-induced Alterations in Renal Tubular Oatp4c1-P-gp Transport Systems in Mice: Impact on Digoxin Renal Excretion and Gadolinium-Enhanced Radiological Manifestations.

Current drug metabolism·2025

Related Experiment Video

Updated: Jul 9, 2025

Live Imaging Followed by Single Cell Tracking to Monitor Cell Biology and the Lineage Progression of Multiple Neural Populations
10:55

Live Imaging Followed by Single Cell Tracking to Monitor Cell Biology and the Lineage Progression of Multiple Neural Populations

Published on: December 16, 2017

8.7K

Opportunities and challenges for deep learning in cell dynamics research.

Binghao Chai1, Christoforos Efstathiou1, Haoran Yue1

  • 1School of Biological and Behavioural Sciences, Queen Mary University of London (QMUL), London E1 4NS, UK.

Trends in Cell Biology
|November 29, 2023
PubMed
Summary

This review examines how artificial intelligence and deep learning are transforming the analysis of cell behavior in microscopy images, highlighting both current capabilities and remaining technical hurdles.

Keywords:
DL tools for organelle detectionneural networks for microscopy analysisopen-source image analysis tools and datasetssubcellular tracking challengescomputer visionartificial intelligenceimage analysiscellular dynamics

Frequently Asked Questions

More Related Videos

Author Spotlight: Enhancing PSC-to-Functional Cell Differentiation Using ML Models Based on Live-Cell Bright-Field Imaging
11:38

Author Spotlight: Enhancing PSC-to-Functional Cell Differentiation Using ML Models Based on Live-Cell Bright-Field Imaging

Published on: October 4, 2024

588
DNA Virus Detection System Based on RPA-CRISPR/Cas12a-SPM and Deep Learning
04:17

DNA Virus Detection System Based on RPA-CRISPR/Cas12a-SPM and Deep Learning

Published on: May 10, 2024

784

Related Experiment Videos

Last Updated: Jul 9, 2025

Live Imaging Followed by Single Cell Tracking to Monitor Cell Biology and the Lineage Progression of Multiple Neural Populations
10:55

Live Imaging Followed by Single Cell Tracking to Monitor Cell Biology and the Lineage Progression of Multiple Neural Populations

Published on: December 16, 2017

8.7K
Author Spotlight: Enhancing PSC-to-Functional Cell Differentiation Using ML Models Based on Live-Cell Bright-Field Imaging
11:38

Author Spotlight: Enhancing PSC-to-Functional Cell Differentiation Using ML Models Based on Live-Cell Bright-Field Imaging

Published on: October 4, 2024

588
DNA Virus Detection System Based on RPA-CRISPR/Cas12a-SPM and Deep Learning
04:17

DNA Virus Detection System Based on RPA-CRISPR/Cas12a-SPM and Deep Learning

Published on: May 10, 2024

784

Area of Science:

  • Computational biology and deep learning applications in microscopy
  • Cellular dynamics research within systems biology

Background:

No prior work has fully synthesized the rapid integration of advanced computational models into cellular imaging workflows. Researchers often struggle to quantify complex biological movements within high-resolution video data. That uncertainty drove the need for standardized automated pipelines to replace manual observation. Prior research has shown that traditional image processing often fails to capture subtle structural changes over time. This gap motivated a comprehensive look at how modern algorithms handle temporal information. It was already known that manual annotation remains a significant bottleneck for large-scale biological studies. That limitation hindered the throughput of drug discovery and precision medicine initiatives. This review addresses the current landscape of machine-assisted analysis in the life sciences.

Purpose Of The Study:

The aim of this review is to survey the current state of artificial intelligence techniques applied to cell dynamics research. This study addresses the need to understand how computational models improve the evaluation of microscopy data. The authors seek to clarify the role of deep learning in overcoming manual analysis limitations. This work explores the specific computational tasks of segmentation, classification, and tracking within biological imaging. The researchers intend to summarize long-standing challenges that persist in the analysis of microscopy videos. This review provides a perspective on how automated tools support drug development and precision medicine. The authors aim to highlight emerging research frontiers in the field of AI-guided automation. This synthesis serves to guide future efforts in bridging the gap between computer vision and cell biology.

Main Methods:

Review approach involved a systematic survey of existing computational techniques and software tools. The authors examined literature focusing on automated image processing pipelines for biological movies. This synthesis prioritized methods designed for the segmentation of cellular structures. The team evaluated how various architectures handle the classification of dynamic biological events. Review approach included an assessment of available open-source repositories for training data. The authors scrutinized common computational hurdles encountered during the analysis of temporal imaging sequences. This synthesis compared different algorithmic strategies for tracking subcellular movements across multiple frames. The investigation focused on identifying emerging frontiers in automated image evaluation.

Main Results:

Key findings from the literature indicate that deep learning has significantly increased the adoption of automated computer vision for microscopy. The review identifies segmentation, classification, and tracking as the primary computational tasks currently supported by these models. Key findings from the literature show that these techniques address long-standing hurdles in the quantitative evaluation of dynamic biological processes. The authors report that AI-based tools are now supporting advancements in genome-phenome mapping. Key findings from the literature reveal that open-source datasets are essential for the ongoing development of these automated systems. The review documents that current research is shifting toward DL-guided automation for complex cellular dynamics. Key findings from the literature suggest that these computational advancements are facilitating progress in drug development. The authors conclude that these methods are essential for modern precision medicine workflows.

Conclusions:

The authors suggest that deep learning architectures offer transformative potential for high-throughput biological quantification. Synthesis and implications indicate that automated segmentation and tracking remain the primary focus for current computational efforts. Researchers propose that addressing data scarcity through open-source repositories will improve model robustness across diverse imaging modalities. The review highlights that integrating temporal context is vital for capturing complex subcellular behaviors accurately. Authors note that current bottlenecks involve the generalization of trained models to unseen experimental conditions. They suggest that future progress relies on bridging the divide between computer vision experts and cell biologists. The analysis emphasizes that standardized benchmarks are required to evaluate the performance of emerging automated tools. Finally, the authors conclude that AI-guided automation will continue to reshape the efficiency of genome-phenome mapping efforts.

The researchers propose that deep learning improves quantitative analysis by automating segmentation, classification, and tracking of cellular structures. Unlike manual methods, these algorithms process large-scale microscopy movies to extract dynamic biological information efficiently.

The authors identify open-source datasets as a critical resource for training and validating models. These repositories provide the necessary ground truth for algorithms to learn complex patterns in subcellular dynamics.

The authors state that tracking is necessary to follow individual subcellular structures over time. This technical requirement allows researchers to map dynamic changes within the cell that static snapshots cannot reveal.

The review highlights that segmentation serves as the foundation for isolating distinct cellular components. By defining boundaries, this data type enables subsequent classification and movement analysis of specific biological entities.

The authors describe the measurement of cellular and subcellular dynamics as a primary research frontier. This phenomenon involves quantifying movement patterns that were previously difficult to characterize without automated assistance.

The researchers propose that AI-guided automation will support future advances in drug development and precision medicine. They suggest these tools will accelerate the translation of basic biological findings into clinical applications.