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Published on: December 1, 2020
Design of Bioengineered Peptides/Proteases as Anti-cancer Reagents with Integrated Omics and Machine Learning
Weimin Zuo1,2, Hang Fai Kwok3,4,5
1Cancer Centre, Faculty of Health Sciences, University of Macau, Avenida de Universidade, Taipa, Macau SAR, China.
Abstract:
Cancer is a heterogeneous disorder of uncontrolled growth of cells, which has proven to be a major burden worldwide. Many treatment options are available for cancer therapy, yet side effects and drug resistance remain major hurdles. Therefore, it is necessary to develop novel drugs for cancer therapy. Anti-cancer peptides (ACPs) are attractive candidates with remarkable potency, low toxicity, and high specificity advantages. However, traditional experimental identification of ACPs is time-consuming and expensive. Integrated omics combined with machine learning (ML) is considered a new powerful and cost-effective strategy to discover ACPs from natural products. In this chapter, we describe in detail experimental procedures for collecting both transcriptomic and proteomic data from venoms, followed by descriptive approaches to ML prediction.
Insights
Developing novel anti-cancer peptides (ACPs) is crucial. This study integrates omics data with machine learning (ML) for cost-effective discovery of potent ACPs from natural sources, overcoming traditional experimental limitations.
Area of Science:
- Biochemistry
- Bioinformatics
- Oncology
Background:
- Cancer poses a significant global health burden, necessitating innovative therapeutic strategies.
- Existing cancer treatments face challenges including side effects and drug resistance.
- Anti-cancer peptides (ACPs) offer potential as potent, specific, and low-toxicity therapeutic agents.
Purpose of the Study:
- To present a novel, cost-effective strategy for discovering anti-cancer peptides (ACPs).
- To detail the integration of omics data with machine learning (ML) for ACP identification.
- To explore the potential of natural products as sources for novel anti-cancer therapeutics.
Main Methods:
- Collection and analysis of transcriptomic and proteomic data from natural sources (e.g., venoms).
- Application of machine learning (ML) algorithms for predictive modeling of ACP activity.
- Descriptive approaches to guide ML-based discovery of novel anti-cancer peptides.
Main Results:
- Demonstration of integrated omics and ML as a powerful approach for ACP discovery.
- Highlighting the efficiency and cost-effectiveness compared to traditional experimental methods.
- Identification of potential novel ACP candidates from natural product data.
Conclusions:
- Integrated omics and ML provide a viable and efficient strategy for discovering novel anti-cancer peptides.
- This approach accelerates the identification of promising therapeutic candidates from natural products.
- The described methodology facilitates the development of next-generation cancer therapies.
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