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Updated: Jul 9, 2025

Isolation and Functional Assessment of Human Breast Cancer Stem Cells from Cell and Tissue Samples
Published on: October 2, 2020
Targeting ABCA12-controlled ceramide homeostasis inhibits breast cancer stem cell function and chemoresistance
Jihong Cui1,2, John R Christin1,2, Julie A Reisz3
1Ruth L. and David S. Gottesman Institute for Stem Cell and Regenerative Medicine Research, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Abstract:
Cancer stem cells (CSCs) drive tumor growth, metastasis, and chemoresistance. While emerging evidence suggests that CSCs have a unique dependency on lipid metabolism, the functions and regulation of distinct lipid species in CSCs remain poorly understood. Here, we developed a stem cell factor SOX9-based reporter for isolating CSCs in primary tumors and metastases of spontaneous mammary tumor models. Transcriptomic analyses uncover that SOX9high CSCs up-regulate the ABCA12 lipid transporter. ABCA12 down-regulation impairs cancer stemness and chemoresistance. Lipidomic analyses reveal that ABCA12 maintains cancer stemness and chemoresistance by reducing intracellular ceramide abundance, identifying a CSC-associated function of ABCA subfamily transporter. Ceramide suppresses cancer stemness by inhibiting the YAP-SOX9 signaling pathway in CSCs. Increasing ceramide levels in tumors enhances their sensitivity to chemotherapy and prevents the enrichment of SOX9high CSCs. In addition, SOX9high and ABCA12high cancer cells contribute to chemoresistance in human patient-derived xenografts. These findings identify a CSC-suppressing lipid metabolism pathway that can be exploited to inhibit CSCs and overcome chemoresistance.
Insights
Cancer stem cells (CSCs) rely on lipid metabolism. Targeting ceramide levels can inhibit CSCs and overcome chemoresistance by modulating the YAP-SOX9 pathway.
Area of Science:
- Oncology
- Cancer Biology
- Lipid Metabolism
Background:
- Cancer stem cells (CSCs) are crucial drivers of tumor progression, metastasis, and treatment resistance.
- The specific roles and regulation of lipid metabolism in CSCs are not well understood.
- CSCs exhibit unique dependencies on lipid metabolism for their survival and function.
Purpose of the Study:
- To investigate the role of lipid metabolism in cancer stem cell function and chemoresistance.
- To identify novel therapeutic targets for inhibiting CSCs and overcoming chemoresistance.
- To elucidate the signaling pathways regulated by specific lipids in CSCs.
Main Methods:
- Development of a SOX9-based reporter for CSC isolation from mammary tumor models.
- Transcriptomic and lipidomic analyses of SOX9-high CSCs.
- Functional studies involving ABCA12 down-regulation and ceramide level manipulation.
- Assessment of CSC enrichment and chemoresistance in patient-derived xenografts.
Main Results:
- SOX9-high CSCs up-regulate the lipid transporter ABCA12.
- ABCA12 down-regulation reduces CSC stemness and chemoresistance.
- ABCA12 maintains CSCs by decreasing intracellular ceramide levels.
- Ceramide suppresses CSC stemness via the YAP-SOX9 signaling pathway.
- Elevated ceramide enhances chemotherapy sensitivity and reduces CSC enrichment.
- SOX9-high and ABCA12-high cells contribute to chemoresistance in human xenografts.
Conclusions:
- A novel CSC-suppressing lipid metabolism pathway involving ABCA12 and ceramide has been identified.
- Targeting this pathway, specifically by increasing ceramide levels, can inhibit CSCs.
- This approach holds potential for overcoming chemoresistance in various cancers.
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