Related Experiment Video
Updated: Jul 9, 2025

Assays for Validating Histone Acetyltransferase Inhibitors
Published on: August 6, 2020
HDAC6 preserves BNIP3 expression and mitochondrial integrity by deacetylating p53 at lysine 320
Se-In Lee1, Yuri Seo1, Hoang Thi Oanh1
1Graduate School of Analytical Science and Technology (GRAST), Chungnam National University, Daejeon, 305-764, Republic of Korea.
Abstract:
HDAC6 has been reported as a deacetylase of p53 at multiple lysine residues, associated with the canonical functions of p53, such as apoptosis and tumor suppression. We have previously reported that p53 acetylation at the lysine 320 site accumulates due to the genetic ablation of HDAC6 in mice liver. However, the biological processes affected by K320 acetylation of p53 are yet to be elucidated. In this study, we demonstrate that K320 acetylation of p53 is regulated by HDAC6 deacetylase activity. HDAC6 knockout mouse brains exhibit a significant accumulation of K320 acetylated p53 compared to other tissues. The level of K320 acetylation of p53 inversely correlates with the level of BNIP3, a direct target of p53 and essential for mitophagy. Notably, overexpressing the deacetylation mimic K320R mutant p53 restored BNIP3 expression in HDAC6 knockout MEFs. Furthermore, we observed that neurons are particularly susceptible to the genetic ablation of HDAC6, impacting BNIP3 expression, which inversely correlates with the accumulation of abnormal mitochondria characterized by swollen cristae. Our findings suggest that HDAC6 plays a crucial role in maintaining BNIP3 expression by deacetylating p53 at the K320 site, which is linked to the structural integrity of mitochondria.
Insights
Histone deacetylase 6 (HDAC6) regulates p53 acetylation at K320, impacting mitophagy and mitochondrial structure. Loss of HDAC6 impairs BNIP3 expression, leading to abnormal mitochondria, particularly in neurons.
Area of Science:
- Cellular Biology
- Neuroscience
- Biochemistry
Background:
- Histone deacetylase 6 (HDAC6) deacetylates p53 at multiple sites, influencing apoptosis and tumor suppression.
- Previous work showed p53 acetylation at K320 increases in HDAC6-ablated mouse liver.
- The biological impact of p53 K320 acetylation remains unclear.
Purpose of the Study:
- To investigate the role of HDAC6 deacetylase activity in regulating p53 K320 acetylation.
- To elucidate the biological consequences of p53 K320 acetylation, particularly in the brain.
- To determine the link between HDAC6, p53 acetylation, mitophagy, and mitochondrial integrity.
Main Methods:
- Utilized HDAC6 knockout mouse models and MEFs (mouse embryonic fibroblasts).
- Assessed p53 acetylation at K320 and BNIP3 expression levels via Western blotting and other biochemical assays.
- Employed a K320R mutant p53 to mimic deacetylation and observed its effect on BNIP3 expression.
- Examined mitochondrial morphology in neurons from HDAC6 knockout mice.
Main Results:
- HDAC6 knockout mouse brains showed significantly higher p53 K320 acetylation compared to other tissues.
- p53 K320 acetylation levels were inversely correlated with BNIP3 expression.
- Restoration of BNIP3 expression was observed upon overexpression of K320R mutant p53 in HDAC6 knockout MEFs.
- Neurons lacking HDAC6 exhibited reduced BNIP3 expression and accumulated abnormal mitochondria with swollen cristae.
Conclusions:
- HDAC6 deacetylase activity is critical for regulating p53 acetylation at the K320 site.
- HDAC6-mediated deacetylation of p53 at K320 is essential for maintaining BNIP3 expression.
- This pathway is crucial for mitophagy and preserving mitochondrial structural integrity, with neurons being particularly vulnerable to HDAC6 loss.
Related Concept Videos
Abnormal Proliferation
Covalently Linked Protein Regulators
These groups modify specific amino acids in a protein....
Spreading of Chromatin Modifications
Writers
The writer...
Histone Modification
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
Histone Variants at the Centromere
Chromatin Modification in iPS Cells
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...

