Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Bacterial Transcription01:53

Bacterial Transcription

28.3K
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
28.3K
Regulation of Expression at Multiple Steps01:23

Regulation of Expression at Multiple Steps

917
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
917
Bacterial RNA Polymerase00:43

Bacterial RNA Polymerase

29.6K
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
29.6K
Improving Translational Accuracy02:07

Improving Translational Accuracy

11.1K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
11.1K
Combinatorial Gene Control02:33

Combinatorial Gene Control

8.4K
Combinatorial gene control is the synergistic action of several transcriptional factors to regulate the expression of a single gene. The absence of one or more of these factors may lead to a significant difference in the level of gene expression or repression.
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
8.4K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Agnostic material classification using differential de Bruijn graphs of DNA imprints.

bioRxiv : the preprint server for biology·2026
Same author

Overestimating zero-shot fitness prediction: Broad benchmarks mask local failures and practical limitations.

bioRxiv : the preprint server for biology·2026
Same author

Integrating Transcription Factors with Electrochemical Pendulum Bioanalysis for Hormone Detection.

Journal of the American Chemical Society·2026
Same author

A Case Report of Surgical Resection of Primary Retroperitoneal Squamous Cell Carcinoma and Postoperative Local Recurrence.

Cureus·2026
Same author

Validation and analysis of 12,000 AI-driven CAR-T designs in the <i>Bits to Binders</i> competitions.

bioRxiv : the preprint server for biology·2026
Same author

Preclinical Evaluation of Synthetic Biology-Driven Engineered <i>Escherichia coli</i> Nissle 1917 as a Living Therapeutic for Sustained L-DOPA Delivery.

ACS synthetic biology·2026

Related Experiment Video

Updated: Jul 9, 2025

OnePot PURE Cell-Free System
08:25

OnePot PURE Cell-Free System

Published on: June 23, 2021

8.7K

Changes in Coding and Efficiency through Modular Modifications to a One Pot PURE System for In Vitro Transcription

Phuoc H T Ngo1, Satoshi Ishida1, Bianca B Busogi1

  • 1Department of Molecular Biosciences, University of Texas at Austin, Austin, Texas 78712, United States.

ACS Synthetic Biology
|December 5, 2023
PubMed
Summary

This study enhances the Protein Synthesis Using Recombinant Elements (PURE) system for efficient, site-specific incorporation of unnatural amino acids into proteins. The modified system demonstrates flexibility by using orthogonal aminoacyl-tRNA synthetase:tRNA pairs to suppress stop codons.

Keywords:
PURE systemcell-free transcription and translationorthogonal aminoacyl-tRNA synthetaseunnatural amino acids incorporation

More Related Videos

Rapid Assembly of Multi-Gene Constructs using Modular Golden Gate Cloning
08:31

Rapid Assembly of Multi-Gene Constructs using Modular Golden Gate Cloning

Published on: February 5, 2021

13.6K
DNA-Tethered RNA Polymerase for Programmable In vitro Transcription and Molecular Computation
09:26

DNA-Tethered RNA Polymerase for Programmable In vitro Transcription and Molecular Computation

Published on: December 29, 2021

4.2K

Related Experiment Videos

Last Updated: Jul 9, 2025

OnePot PURE Cell-Free System
08:25

OnePot PURE Cell-Free System

Published on: June 23, 2021

8.7K
Rapid Assembly of Multi-Gene Constructs using Modular Golden Gate Cloning
08:31

Rapid Assembly of Multi-Gene Constructs using Modular Golden Gate Cloning

Published on: February 5, 2021

13.6K
DNA-Tethered RNA Polymerase for Programmable In vitro Transcription and Molecular Computation
09:26

DNA-Tethered RNA Polymerase for Programmable In vitro Transcription and Molecular Computation

Published on: December 29, 2021

4.2K

Area of Science:

  • Biochemistry
  • Molecular Biology
  • Synthetic Biology

Background:

  • Unnatural amino acid incorporation enhances protein functionality.
  • Cell-free protein synthesis, particularly the Protein Synthesis Using Recombinant Elements (PURE) system, is a powerful platform for this purpose.

Purpose of the Study:

  • To adapt and modify the One Pot PURE system for robust and modular single-site-specific unnatural amino acid incorporation.
  • To demonstrate the system's flexibility using orthogonal aminoacyl-tRNA synthetase:tRNA pairs.

Main Methods:

  • Modification of the One Pot PURE system.
  • Introduction of two distinct orthogonal aminoacyl-tRNA synthetase:tRNA pairs.
  • Utilizing stop codon suppression for site-specific incorporation.

Main Results:

  • A robust and modular system for enzymatic single-site-specific unnatural amino acid incorporation was developed.
  • The system successfully demonstrated flexibility through the suppression of two different stop codons in separate reactions.

Conclusions:

  • The enhanced One Pot PURE system provides a versatile platform for site-specific unnatural amino acid incorporation.
  • This advancement facilitates the creation of novel peptides and proteins with tailored functions.