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Updated: Jul 8, 2025

A Robust Discovery Platform for the Identification of Novel Mediators of Melanoma Metastasis
Published on: March 8, 2022
The therapeutically actionable long non-coding RNA 'T-RECS' is essential to cancer cells' survival in
Valentin Feichtenschlager1, Linan Chen1, Yixuan James Zheng1
1University of California San Francisco.
Abstract:
Finding effective therapeutic targets to treat NRAS-mutated melanoma remains a challenge. Long non-coding RNAs (lncRNAs) recently emerged as essential regulators of tumorigenesis. Using a discovery approach combining experimental models and unbiased computational analysis complemented by validation in patient biospecimens, we identified a nuclear-enriched lncRNA (AC004540.4) that is upregulated in NRAS/MAPK-dependent melanoma, and that we named T-RECS. Considering potential innovative treatment strategies, we designed antisense oligonucleotides (ASOs) to target T-RECS. T-RECS ASOs reduced the growth of melanoma cells and induced apoptotic cell death, while having minimal impacton normal primary melanocytes. Mechanistically, treatment with T-RECS ASOs downregulated the activity of pro-survival kinases and reduced the protein stability of hnRNPA2/B1, a pro-oncogenic regulator of MAPK signaling. Using patient- and cell line- derived tumor xenograft mouse models, we demonstrated that systemic treatment with T-RECS ASOs significantly suppressed the growth of melanoma tumors, with no noticeable toxicity. ASO-mediated T-RECS inhibition represents a promising RNA-targeting approach to improve the outcome of MAPK pathway-activated melanoma.
Insights
Targeting the T-RECS long non-coding RNA with antisense oligonucleotides (ASOs) effectively inhibits NRAS-mutated melanoma growth. This RNA-targeting strategy shows promise for treating MAPK pathway-activated melanoma with minimal toxicity.
Area of Science:
- Oncology
- Molecular Biology
- RNA Therapeutics
Background:
- NRAS-mutated melanoma presents a significant therapeutic challenge.
- Long non-coding RNAs (lncRNAs) are increasingly recognized as key regulators in cancer development.
- Identifying novel therapeutic targets is crucial for improving patient outcomes in melanoma.
Approach:
- Utilized a combined experimental and computational approach to identify novel lncRNAs in melanoma.
- Discovered and validated a nuclear-enriched lncRNA, T-RECS (AC004540.4), upregulated in NRAS/MAPK-dependent melanoma.
- Designed and tested antisense oligonucleotides (ASOs) targeting T-RECS in preclinical melanoma models.
Key Points:
- T-RECS ASOs demonstrated significant melanoma cell growth inhibition and induced apoptosis.
- T-RECS ASOs downregulated pro-survival kinase activity and hnRNPA2/B1 protein stability.
- Systemic ASO treatment targeting T-RECS suppressed tumor growth in xenograft models with no observed toxicity.
Conclusions:
- ASO-mediated inhibition of T-RECS is a potential therapeutic strategy for NRAS-mutated melanoma.
- This RNA-targeting approach offers a promising avenue for treating MAPK pathway-activated melanoma.
- T-RECS ASOs represent a novel therapeutic modality with a favorable safety profile in preclinical studies.
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