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Updated: Jul 8, 2025

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
Published on: June 11, 2015
Genomic and biological characteristics of a novel lytic phage, vB_MscM-PMS3, infecting the opportunistic zoonotic
Hyemin Kwon1, Seon Young Park2, Seungki Lee3
1Department of Microbiology and Molecular Biology, College of Bioscience and Biotechnology, Chungnam National University, Daejeon, 34134, Republic of Korea.
Abstract:
Mammaliicoccus sciuri is an opportunistic zoonotic pathogen in humans and animals. We isolated the Mammaliicoccus phage vB_MscM-PMS3, which was also able to infect and lyse M. sciuri and M. lentus. The phage genome is a linear dsDNA that is 147,811 bp in length and contains 206 ORFs and three tRNA genes. It showed low genome coverage (< 17%) and sequence identity (< 91.3%) to other phage genomes. Phylogenetic analysis based on the whole genome and major capsid protein revealed that this phage clustered with members of the subfamily Twortvirinae of the family Herelleviridae, but it was distinctly separated from the other members, indicating its uniqueness.
Insights
Researchers discovered a novel bacteriophage, vB_MscM-PMS3, capable of infecting and lysing Mammaliicoccus sciuri, an opportunistic pathogen. This unique phage exhibits distinct genomic and phylogenetic characteristics, setting it apart from known relatives.
Area of Science:
- Microbiology and Virology
- Bacteriophage Research
- Genomic Analysis
Background:
- Mammaliicoccus sciuri is recognized as an opportunistic zoonotic pathogen affecting both humans and animals.
- The need for novel antimicrobial strategies against such pathogens is growing.
Purpose of the Study:
- To isolate and characterize a novel bacteriophage with lytic activity against Mammaliicoccus sciuri.
- To determine the genomic and phylogenetic uniqueness of the isolated phage.
Main Methods:
- Isolation and purification of bacteriophage vB_MscM-PMS3.
- Determination of host range, including infection and lysis capabilities against M. sciuri and M. lentus.
- Whole-genome sequencing and bioinformatic analysis, including ORF identification and tRNA gene detection.
- Phylogenetic analysis using whole-genome data and major capsid protein sequences.
Main Results:
- The isolated phage, vB_MscM-PMS3, demonstrated the ability to infect and lyse M. sciuri and M. lentus.
- The phage possesses a linear double-stranded DNA genome of 147,811 bp, encoding 206 ORFs and three tRNA genes.
- Genomic analysis revealed low coverage (<17%) and sequence identity (<91.3%) compared to other known phage genomes.
- Phylogenetic analysis placed vB_MscM-PMS3 within the Twortvirinae subfamily (Herelleviridae) but distinctly separated from other members.
Conclusions:
- Bacteriophage vB_MscM-PMS3 represents a novel phage with significant lytic activity against M. sciuri.
- The unique genomic and phylogenetic profile of vB_MscM-PMS3 highlights its distinct evolutionary lineage.
- This discovery contributes to the understanding of phage diversity and offers potential for phage therapy applications.
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