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Related Concept Videos

Next-generation Sequencing03:00

Next-generation Sequencing

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The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
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Ribosome Profiling02:24

Ribosome Profiling

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Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
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RNA-seq03:21

RNA-seq

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RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
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Bacterial Transcription01:53

Bacterial Transcription

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RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
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Regulation of Expression Occurs at Multiple Steps02:24

Regulation of Expression Occurs at Multiple Steps

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Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
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Genomics02:02

Genomics

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Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
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The rise of epitranscriptomics: recent developments and future directions.

Jonas Cerneckis1, Guo-Li Ming2, Hongjun Song3

  • 1Department of Neurodegenerative Diseases, Beckman Research Institute of City of Hope, Duarte, CA 91010, USA; Irell & Manella Graduate School of Biological Sciences, Beckman Research Institute of City of Hope, Duarte, CA 91010, USA.

Trends in Pharmacological Sciences
|December 16, 2023
PubMed
Summary

Epitranscriptomics, the study of reversible RNA modifications like N6-methyladenosine (m6A), is rapidly advancing. New detection methods and therapeutic strategies are emerging for cancer and other diseases.

Keywords:
N(6)-methyladenosineRNA modificationsdrug developmentepitranscriptomicsmachine learningnanopore sequencingpseudouridine

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Area of Science:

  • Epitranscriptomics
  • Molecular Biology
  • Genomics

Background:

  • The field of epitranscriptomics has expanded significantly with the discovery of reversible RNA modifications, particularly N6-methyladenosine (m6A).
  • Mapping RNA modifications across the transcriptome and understanding their role in disease are crucial for mechanistic insights and drug discovery.

Purpose of the Study:

  • To review recent advancements in RNA modification detection methods.
  • To explore the application of these methods for novel epitranscriptomic insights.
  • To highlight drug discovery efforts and emerging strategies for epitranscriptomic engineering.

Main Methods:

  • Review of recent literature on RNA modification detection techniques.
  • Analysis of current drug discovery approaches targeting the epitranscriptome.
  • Discussion of emerging technologies for epitranscriptome engineering.

Main Results:

  • Significant progress in RNA modification detection methods enables comprehensive transcriptome-wide mapping.
  • Advancements facilitate deeper understanding of epitranscriptome roles in disease.
  • Emerging epitranscriptomic therapeutics show promise for cancer treatment.

Conclusions:

  • New detection methods are revolutionizing epitranscriptomics research.
  • Targeting the epitranscriptome offers a promising avenue for therapeutic development.
  • Engineering the epitranscriptome presents a novel approach to study RNA modification effects.