A procedure to harmonize the hydrodynamic force during microbial cultivation in shaking flasks
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Updated: Jun 23, 2026

The Use of Chemostats in Microbial Systems Biology
Published on: October 14, 2013
Lúcia Chaves Simões1,2, Isabel Oliveira3,4, Anabela Borges3,4
1Centre of Biological Engineering, University of Minho, Campus de Gualtar, Braga, Portugal.
Abstract:
Shake flask cultivation is a routine technique in microbiology and biotechnology laboratories where cell growth can be affected by the hydrodynamic conditions, which depend on the agitation velocity, shaking diameter, and shake flask size. Liquid agitation is implemented inherently to increase aeration, substrate transfer to the cells, and prevent sedimentation, disregarding the role of hydrodynamics in microbial growth and metabolism. Here, we present a simple approach to help standardize the hydrodynamic forces in orbital shakers to increase the experimental accuracy and reproducibility and give students a better knowledge of the significance of the agitation process in microbial growth.
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