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Learning from vertically distributed data across multiple sites: An efficient privacy-preserving algorithm for Cox

Guanhong Miao1, Lei Yu2, Jingyun Yang2

  • 1Department of Epidemiology, College of Public Health & Health Professions and College of Medicine, University of Florida, Gainesville, FL, USA; Center for Genetic Epidemiology and Bioinformatics, University of Florida, Gainesville, FL, USA; Department of Biostatistics, College of Public Health & Health Professions and College of Medicine, University of Florida, Gainesville, FL, USA.

Journal of Biomedical Informatics
|December 24, 2023
PubMed
Summary
This summary is machine-generated.

This study introduces a privacy-preserving, lossless distributed algorithm for regularized Cox models, enabling accurate analysis of time-to-event data in federated learning settings without compromising patient data.

Keywords:
Cox proportional hazards modelDistributed algorithmPrivacy preservingVariable selectionVertical partitioning

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Area of Science:

  • Distributed computing
  • Biostatistics
  • Machine learning

Background:

  • Federated learning enables collaborative model training without direct data sharing.
  • Distributed data presents challenges for traditional statistical modeling, particularly for survival analysis.
  • Privacy-preserving methods are crucial for handling sensitive health data.

Purpose of the Study:

  • To develop a lossless, distributed algorithm for the regularized Cox proportional hazards model with variable selection.
  • To support federated learning for vertically distributed data in survival analysis.
  • To enable accurate time-to-event data modeling without compromising patient privacy.

Main Methods:

  • A novel distributed algorithm based on cyclical coordinate descent is proposed.
  • Intermediary statistics are computed locally and exchanged for model updates, preserving data privacy.
  • The algorithm was evaluated using simulations and real-world Alzheimer's dementia risk prediction data (ROSMAP).

Main Results:

  • The distributed algorithm achieves privacy-preserving variable selection for time-to-event data with no accuracy loss compared to centralized methods.
  • Simulations confirm high efficiency in analyzing high-dimensional datasets.
  • Real-world analysis showed improved Alzheimer's dementia risk prediction accuracy and computational efficiency over existing privacy-preserving models.

Conclusions:

  • The developed algorithm is lossless, privacy-preserving, and efficient for fitting regularized Cox models with distributed data.
  • It offers a practical solution for distributed time-to-event data modeling.
  • This approach facilitates collaborative research while maintaining data security and analytical integrity.