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Published on: April 4, 2018
Induction of Translational Readthrough on Protein Tyrosine Phosphatases Targeted by Premature Termination Codon
Leire Torices1, Caroline E Nunes-Xavier1,2, Janire Mingo1
1Biobizkaia Health Research Institute, Barakaldo, Spain.
Abstract:
Nonsense mutations generating premature termination codons (PTCs) in various genes are frequently associated with somatic cancer and hereditary human diseases since PTCs commonly generate truncated proteins with defective or altered function. Induced translational readthrough during protein biosynthesis facilitates the incorporation of an amino acid at the position of a PTC, allowing the synthesis of a complete protein. This may evade the pathological effect of the PTC mutation and provide new therapeutic opportunities. Several protein tyrosine phosphatases (PTPs) genes are targeted by PTC in human disease, the tumor suppressor PTEN being the more prominent paradigm. Here, using PTEN and laforin as examples, two PTPs from the dual-specificity phosphatase subfamily, we describe methodologies to analyze in silico the distribution and frequency of pathogenic PTC in PTP genes. We also summarize laboratory protocols and technical notes to study the induced translational readthrough reconstitution of the synthesis of PTP targeted by PTC in association with disease in cellular models.
Insights
Premature termination codons (PTCs) cause disease by creating faulty proteins. This study explores methods to analyze PTCs in protein tyrosine phosphatase genes and induce readthrough to restore full protein function for therapeutic benefit.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Nonsense mutations creating premature termination codons (PTCs) lead to truncated, non-functional proteins, causing various genetic diseases and cancers.
- Protein tyrosine phosphatases (PTPs), including the tumor suppressor PTEN, are frequently affected by PTCs, highlighting their importance in disease pathology.
Purpose of the Study:
- To develop and present methodologies for analyzing the distribution and frequency of pathogenic PTCs within PTP genes.
- To summarize laboratory protocols for studying induced translational readthrough to restore PTP function in cellular models.
Main Methods:
- In silico analysis of PTC distribution and frequency in PTP genes.
- Laboratory protocols for studying induced translational readthrough in cellular models.
Main Results:
- Methodologies for in silico analysis of PTCs in PTP genes were established.
- Protocols for studying translational readthrough to restore PTP synthesis were summarized.
Conclusions:
- Induced translational readthrough offers a potential therapeutic strategy to counteract the effects of PTCs in PTP-related diseases.
- This work provides tools and protocols for further research into PTCs and translational readthrough therapies for PTP-associated conditions.
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