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A Standardized Liquid Biopsy Preanalytical Protocol for Downstream Circulating-Free DNA Applications
Published on: September 16, 2022
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Liquid biopsy for precision diagnostics and therapeutics
Kuttiappan Anitha1, Bhargavi Posinasetty2, K Naveen Kumari3
1Department of Pharmacology, School of Pharmacy and Technology Management (SPTM), SVKM's Narsee Monjee Institute of Management Studies (NMIMS) Deemed-to-University, Shirpur 425405, India.
Clinica Chimica Acta; International Journal of Clinical Chemistry
|December 27, 2023
Summary
Liquid biopsy offers a non-invasive method for cancer diagnosis by analyzing biomarkers like circulating tumor DNA (ctDNA) in bodily fluids. This approach aids in early detection, treatment monitoring, and understanding tumor characteristics.
Area of Science:
- Oncology
- Molecular Diagnostics
- Biochemistry
Background:
- Liquid biopsy (LB) is a minimally invasive diagnostic technique analyzing biomolecules in physiological fluids.
- It offers advantages over traditional tissue biopsies for oncology and other medical fields.
- Biomolecules analyzed include circulating tumor DNA (ctDNA), circulating tumor cells (CTCs), and cell-free DNA (cfDNA).
Purpose of the Study:
- To review current liquid biopsy technologies and clinical applications.
- To emphasize the isolation and analysis of ctDNA and/or cfDNA.
- To identify tumor markers for cancer detection, prognosis, and treatment monitoring.
Main Methods:
- Review of various LB methodologies including droplet digital PCR, BEAMing, TAm-Seq, CAPP-Seq, WGBS-Seq, WES, and WGS.
- Analysis of ctDNA and cfDNA isolation and detection techniques.
- Exploration of circulating tumor cell (CTC) isolation via biomarker-based cell capture (positive and negative enrichment).
Main Results:
- Liquid biopsy provides insights into tumor characteristics, treatment response, and early disease detection.
- Diverse technologies exist for analyzing ctDNA, cfDNA, and CTCs.
- Challenges in sensitivity, specificity, standardization, and interpretability are addressed.
Conclusions:
- Liquid biopsy is a promising non-invasive tool in oncology.
- Current technologies enable effective identification of tumor markers.
- Further standardization and validation are crucial for widespread clinical adoption.
Keywords:
BiomarkersCell-free nucleic acids (cfNAs)Circulating tumor DNA (ctDNA)Circulating tumor cells (CTCs)ExosomesLiquid biopsyOncology
