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Real Time Monitoring of Intracellular Bile Acid Dynamics Using a Genetically Encoded FRET-based Bile Acid Sensor
Published on: January 4, 2016
BART: A transferable liquid chromatography retention time library for bile acids.
Yan Ma1, Yang Cao2, Xiaocui Song2
1National Institute of Biological Sciences, Beijing 102206, China; Tsinghua Institute of Multidisciplinary Biomedical Research, Tsinghua University, Beijing 100084, China.
A new bile acid retention time library (BART) allows accurate prediction of retention times across different liquid chromatography (LC) systems. This overcomes challenges in identifying bile acid isomers and improves data transferability between laboratories.
Area of Science:
- Analytical Chemistry
- Biochemistry
Background:
- Accurate identification of bile acids, particularly isomers, relies on reference standards, which are often unavailable.
- Published liquid chromatography (LC) retention data is not transferable between labs due to system variations.
Purpose of the Study:
- To develop a transferable bile acid retention time library (BART) for improved identification and data consistency.
- To create a software tool for predicting gradient retention times across diverse LC systems.
Main Methods:
- Developed isocratic retention models for 272 bile acids using the quadratic solvent strength model (QSSM).
- Created a software tool to predict gradient retention times, incorporating system-specific parameters like holdup and dwell times.
- Validated the BART approach on multiple LC-MS systems across different laboratories.
Main Results:
- The BART library and prediction tool demonstrated high accuracy, with average root mean square errors (RMSE) of 0.052-0.054 min.
- Predicted retention times were nine times more accurate than those from static retention time libraries.
- The method showed robust performance across various LC-MS systems and gradient methods.
Conclusions:
- BART provides a reliable and transferable method for predicting bile acid retention times, significantly aiding in isomer identification.
- The developed library and software tool enhance data reproducibility and facilitate bile acid analysis in different laboratory settings.
- The BART library is freely accessible, promoting wider adoption and advancement in bile acid research.
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