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Updated: Jul 6, 2025

Robust DNA Isolation and High-throughput Sequencing Library Construction for Herbarium Specimens
Published on: March 8, 2018
A novel automated label data extraction and data base generation system from herbarium specimen images using OCR and
Atsuko Takano1, Theodor C H Cole2, Hajime Konagai3
1Institute of Natural Science and Environment, University of Hyogo/The Museum of Nature and Human Activities, Hyogo, 6 Chome, Yayoigaoka, Sanda, Hyogo, 669-1546, Japan. takano@hitohaku.jp.
Abstract:
Digital extraction of label data from natural history specimens along with more efficient procedures of data entry and processing is essential for improving documentation and global information availability. Herbaria have made great advances in this direction lately. In this study, using optical character recognition (OCR) and named entity recognition (NER) techniques, we have been able to make further advancements towards fully automatic extraction of label data from herbarium specimen images. This system can be developed and run on a consumer grade desktop computer with standard specifications, and can also be applied to extracting label data from diverse kinds of natural history specimens, such as those in entomological collections. This system can facilitate the digitization and publication of natural history museum specimens around the world.
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