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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Recurrent missense variant identified in two unrelated families with MPZL2-related hearing loss, expanding the
Emma Lo1,2, Justin Blair1,2, Nobuko Yamamoto1,3
1Roberts Individualized Medical Genetics Center (RIMGC), Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Abstract:
MPZL2-related hearing loss is a rare form of autosomal recessive hearing loss characterized by progressive, mild sloping to severe sensorineural hearing loss. Thirty-five previously reported patients had biallelic truncating variants in MPZL2, with the exception of one patient with a missense variant of uncertain significance and a truncating variant. Here, we describe the clinical characteristics and genotypes of five patients from four families with confirmed MPZL2-related hearing loss. A rare missense likely pathogenic variant [NM_005797.4(MPZL2):c.280C>T,p.(Arg94Trp)] located in exon 3 was confirmed to be in trans with a recurrent pathogenic truncating variant that segregated with hearing loss in three of the patients from two unrelated families. This is the first recurrent likely pathogenic missense variant identified in MPZL2. Apparently milder or later-onset hearing loss associated with rare missense variants in MPZL2 indicates that some missense variants in this gene may cause a milder phenotype than that resulting from homozygous or compound heterozygous truncating variants. This study, along with the identification of truncating loss of function and missense MPZL2 variants in several diverse populations, suggests that MPZL2-related hearing loss may be more common than previously appreciated and demonstrates the need for MPZL2 inclusion in hearing loss testing panels.
Insights
MPZL2-related hearing loss, a rare genetic condition, may be more common than previously thought. This study identifies a new missense variant, suggesting some variants cause milder hearing loss.
Area of Science:
- Genetics
- Otolaryngology
- Molecular Biology
Background:
- MPZL2-related hearing loss is a rare autosomal recessive condition.
- It is characterized by progressive sensorineural hearing loss.
- Previously, only truncating variants in MPZL2 were linked to this condition.
Purpose of the Study:
- To describe the clinical and genetic characteristics of five patients with MPZL2-related hearing loss.
- To identify and characterize novel variants in the MPZL2 gene.
- To assess the phenotypic spectrum associated with MPZL2 variants.
Main Methods:
- Clinical evaluation of five patients from four families.
- Genetic analysis including sequencing of the MPZL2 gene.
- Segregation analysis to confirm variant pathogenicity.
Main Results:
- A novel, recurrent likely pathogenic missense variant (c.280C>T, p.(Arg94Trp)) in MPZL2 was identified.
- This missense variant, in trans with a truncating variant, segregated with hearing loss in three patients.
- Missense variants may lead to a milder or later-onset hearing loss phenotype compared to truncating variants.
Conclusions:
- MPZL2-related hearing loss may be more prevalent than previously recognized.
- The identification of both truncating and missense variants suggests a broader spectrum of disease.
- MPZL2 should be included in genetic testing panels for hearing loss evaluation.
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