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Updated: Jul 5, 2025

Method for Measuring the Activity of Deubiquitinating Enzymes in Cell Lines and Tissue Samples
Published on: May 10, 2015
The dimeric deubiquitinase USP28 integrates 53BP1 and MYC functions to limit DNA damage
Chao Jin1,2, Elias Einig1,2, Wenshan Xu3
1Department of Medical Oncology and Pulmonology, University Hospital Tübingen, Otfried-Müller-Str 14, 72076 Tübingen, Germany.
Abstract:
DNA replication is a major source of endogenous DNA damage in tumor cells and a key target of cellular response to genotoxic stress. DNA replication can be deregulated by oncoproteins, such as transcription factor MYC, aberrantly activated in many human cancers. MYC is stringently regulated by the ubiquitin system - for example, ubiquitination controls recruitment of the elongation factor PAF1c, instrumental in MYC activity. Curiously, a key MYC-targeting deubiquitinase USP28 also controls cellular response to DNA damage via the mediator protein 53BP1. USP28 forms stable dimers, but the biological role of USP28 dimerization is unknown. We show here that dimerization limits USP28 activity and restricts recruitment of PAF1c by MYC. Expression of monomeric USP28 stabilizes MYC and promotes PAF1c recruitment, leading to ectopic DNA synthesis and replication-associated DNA damage. USP28 dimerization is stimulated by 53BP1, which selectively binds USP28 dimers. Genotoxic stress diminishes 53BP1-USP28 interaction, promotes disassembly of USP28 dimers and stimulates PAF1c recruitment by MYC. This triggers firing of DNA replication origins during early response to genotoxins and exacerbates DNA damage. We propose that dimerization of USP28 prevents ectopic DNA replication at transcriptionally active chromatin to maintain genome stability.
Insights
USP28 protein dimerization prevents abnormal DNA replication and damage. Stress disrupts this dimerization, increasing replication and DNA damage, revealing a key mechanism for genome stability.
Area of Science:
- Molecular Biology
- Cancer Biology
- Genetics
Background:
- DNA replication is a primary source of DNA damage in cancer cells.
- The oncoprotein MYC, prevalent in cancers, can deregulate DNA replication.
- USP28, a deubiquitinase targeting MYC, also mediates DNA damage response via 53BP1.
Purpose of the Study:
- To investigate the biological role of USP28 dimerization.
- To understand how USP28 dimerization affects MYC activity and DNA replication.
- To elucidate the interplay between USP28, 53BP1, and DNA damage response.
Main Methods:
- Investigated USP28 dimerization using biochemical and cellular assays.
- Assessed the impact of USP28 monomeric versus dimeric forms on MYC recruitment of PAF1c.
- Examined the effect of genotoxic stress on USP28-53BP1 interaction and USP28 dimer stability.
Main Results:
- USP28 dimerization limits its activity and restricts MYC-mediated PAF1c recruitment.
- Monomeric USP28 stabilizes MYC, promoting ectopic DNA synthesis and replication-associated DNA damage.
- 53BP1 binding stimulates USP28 dimerization; genotoxic stress disrupts this interaction, promoting dimer disassembly.
- Disassembly of USP28 dimers under stress stimulates MYC-mediated PAF1c recruitment, triggering DNA replication origin firing and exacerbating DNA damage.
Conclusions:
- USP28 dimerization acts as a critical checkpoint, preventing aberrant DNA replication at transcriptionally active sites.
- The 53BP1-USP28 interaction regulates USP28 dimer stability in response to genotoxic stress.
- USP28 dimerization is essential for maintaining genome stability by controlling DNA replication during stress response.
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