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Updated: Jul 5, 2025

Assays for Validating Histone Acetyltransferase Inhibitors
Published on: August 6, 2020
MDM2 Antagonist Idasanutlin Reduces HDAC1/2 Abundance and Corepressor Partners but Not HDAC3
Joshua P Smalley1, Shaun M Cowley2, James T Hodgkinson1
1Leicester Institute of Structural and Chemical Biology, School of Chemistry, University of Leicester, Leicester LE1 7RH, United Kingdom.
Abstract:
Histone deacetylases 1-3 (HDAC1, HDAC2, and HDAC3) and their associated corepressor complexes play important roles in regulating chromatin structure and gene transcription. HDAC enzymes are also validated drug targets for oncology and offer promise toward new drugs for neurodegenerative diseases and cardiovascular diseases. We synthesized four novel heterobifunctional molecules designed to recruit the mouse double minute 2 homologue (MDM2) E3 ligase to degrade HDAC1-3 utilizing the MDM2 inhibitor idasanutlin, known as proteolysis targeting chimeras (PROTACs). Idasanutlin inhibits the MDM2-P53 protein-protein interaction and is in clinical trials. Although two MDM2-recruiting heterobifunctional molecules reduced HDAC1 and HDAC2 abundance with complete selectivity over HDAC3 and reduced HDAC1/2 corepressor components LSD1 and SIN3A, we were surprised to observe that idasanutlin alone was also capable of this effect. This finding suggests an association between the MDM2 E3 ligase and HDAC1/2 corepressor complexes, which could be important for designing future dual/bifunctional HDAC- and MDM2-targeting therapeutics, such as PROTACs.
Insights
Novel PROTACs targeting HDAC1-3 were synthesized. Unexpectedly, the MDM2 inhibitor idasanutlin alone reduced HDAC1/2 levels, suggesting a link between MDM2 E3 ligase and HDAC1/2 corepressor complexes.
Area of Science:
- Biochemistry
- Molecular Biology
- Drug Discovery
Background:
- Histone deacetylases 1-3 (HDAC1-3) regulate chromatin structure and gene transcription.
- HDACs are drug targets for oncology, neurodegenerative, and cardiovascular diseases.
- Proteolysis targeting chimeras (PROTACs) are emerging therapeutics.
Purpose of the Study:
- To synthesize novel heterobifunctional molecules (PROTACs) to degrade HDAC1-3.
- To investigate the potential of recruiting the MDM2 E3 ligase for HDAC degradation.
- To explore dual-targeting therapeutic strategies.
Main Methods:
- Synthesis of four novel heterobifunctional molecules (PROTACs).
- Utilizing idasanutlin, an MDM2 inhibitor, to recruit the MDM2 E3 ligase.
- Assessing the degradation of HDAC1-3 and corepressor components (LSD1, SIN3A).
Main Results:
- Two PROTACs reduced HDAC1 and HDAC2 abundance selectively over HDAC3.
- These PROTACs also reduced HDAC1/2 corepressor components LSD1 and SIN3A.
- Idasanutlin alone, without the PROTAC linker, reduced HDAC1 and HDAC2 levels.
Conclusions:
- A potential association exists between the MDM2 E3 ligase and HDAC1/2 corepressor complexes.
- Idasanutlin's ability to affect HDAC1/2 suggests a novel mechanism.
- This finding could inform the design of future dual-targeting therapeutics, including PROTACs.
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