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Imaging and Analysis for Quantifying Maize (Zea mays) Abiotic Stress Phenotypes
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Non-coding deep learning models for tomato biotic and abiotic stress classification using microscopic images.

Manoj Choudhary1,2,3, Sruthi Sentil1, Jeffrey B Jones1

  • 1North Florida Research and Education Center, University of Florida, Quincy, FL, United States.

Frontiers in Plant Science
|January 23, 2024
PubMed
Summary

This study introduces non-coding deep learning (NCDL) platforms for classifying tomato plant diseases using microscopic images. NCDL platforms achieved high accuracy, simplifying disease diagnosis and potentially aiding management systems.

Keywords:
abiotic stressbiotic stresscode-free modelsdeep learningdiseasesmachine learningmicroscopic imagestomato

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Area of Science:

  • Plant Pathology
  • Artificial Intelligence
  • Computer Vision

Background:

  • Accurate plant disease classification traditionally requires expert knowledge and laboratory analysis.
  • Microscopic examination of plant samples is crucial for diagnosing diseases.

Purpose of the Study:

  • To evaluate the efficacy of non-coding deep learning (NCDL) platforms for classifying tomato plant diseases using microscopic images.
  • To assess the performance of various NCDL platforms in disease symptom classification.

Main Methods:

  • Utilized microscopic images (×30) of diagnostically validated tomato plant samples.
  • Employed multiple NCDL platforms including Amazon Rekognition Custom Label, Clarifai, Teachable Machine, Google AutoML Vision, Microsoft Azure Custom Vision, and Apple CreateML.
  • Performed external validation to assess model robustness.

Main Results:

  • NCDL platforms demonstrated high performance, with mean F1 scores ranging from 91.6% to 98.5%.
  • Accuracy varied across platforms, with Amazon Rekognition Custom Label reaching 99.8% and Apple CreateML at 87.3%.
  • External validation showed a minimal drop in accuracy (≤7%) for most tested NCDL platforms.

Conclusions:

  • NCDL platforms offer a viable, accurate, and efficient method for classifying tomato plant diseases from microscopic images.
  • These models can support the development of mobile/web applications for disease diagnosis and management.
  • NCDL can improve the speed and efficiency of diagnostic laboratory sample processing through early triage.