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Related Concept Videos

Ribosome Profiling02:24

Ribosome Profiling

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Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
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RACE - Rapid Amplification of cDNA Ends02:35

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Rapid Amplification of cDNA Ends, or RACE, is one of the most effective methods to obtain a full-length cDNA from an mRNA sequence between a known internal region to the unknown sequence at the 5’ or 3’ end. The unknown region is cloned in the cDNA by a gene-specific primer that binds the known end, and a hybrid primer that attaches a predefined anchor sequence to the unknown end of the cDNA. The sequence in between is amplified by PCR with an anchor primer and a gene-specific...
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Related Experiment Video

Updated: Jul 5, 2025

Transcriptome Profiling of In-Vivo Produced Bovine Pre-implantation Embryos Using Two-color Microarray Platform
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A Comprehensive Allele Specific Expression Resource for the Equine Transcriptome.

Harrison D Heath, Sichong Peng, Tomasz Szmatola

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    |January 23, 2024
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    Summary
    This summary is machine-generated.

    This study presents an equine allele-specific expression (ASE) analysis using integrated sequencing data. The findings offer a valuable resource for understanding gene regulation in horses, aiding research into equine health and disease.

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    Area of Science:

    • Genomics
    • Molecular Biology
    • Equine Science

    Background:

    • Allele-specific expression (ASE) analysis offers detailed insights into cis-regulatory mechanisms influencing gene expression.
    • Understanding ASE is crucial for dissecting gene regulation variability.

    Approach:

    • Integrated analysis of long- and short-read RNA sequencing data from four healthy Thoroughbred horses (2 mares, 2 stallions).
    • Incorporation of histone modification data across nine distinct equine tissues.
    • Development of a comprehensive equine ASE resource.

    Key Points:

    • The study establishes a foundational dataset for equine ASE.
    • Provides a molecular-level understanding of allelic imbalance in Thoroughbreds.
    • Highlights the utility of integrated genomic data for regulatory studies.

    Conclusions:

    • The developed equine ASE resource is publicly accessible.
    • Facilitates future research into regulatory variation within equine tissues.
    • Enhances understanding of allelic imbalance in equine health and disease.