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Profiling of Surface Protein Epitopes on Viral Particles by Multiplex Dual-Reporter Strategy.

Maryam Sahi1, Sarah Andersson1, Cecilia Mattson1

  • 1Affinity Proteomics-Stockholm Unit, SciLifeLab, Division of Affinity Proteomics, Department of Protein Science, School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), KTH Royal Institute of Technology.

Journal of Visualized Experiments : Jove
|January 29, 2024
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Summary

This study presents a novel flow cytometry assay for detecting intact severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) viral particles. The method uses multiplex technology to simultaneously analyze multiple surface protein epitopes, aiding antiviral and vaccine development.

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Area of Science:

  • Virology
  • Immunology
  • Biotechnology

Background:

  • Enveloped viruses utilize surface membrane proteins for critical functions like cell attachment, fusion, and pathogenesis.
  • Viral surface proteins are key targets for developing antivirals and vaccines.
  • Accurate detection of intact viral particles is crucial for understanding viral behavior and developing countermeasures.

Purpose of the Study:

  • To describe a novel dual-reporter flow cytometric protocol for investigating surface proteins on intact SARS-CoV-2 particles.
  • To demonstrate the capability of multiplex technology for triple detection of viral particles using independent affinity reactions.
  • To validate the assay's performance for detecting viral surface protein epitopes and its potential applications.

Main Methods:

  • Utilized magnetic beads conjugated with recombinant human angiotensin-converting enzyme-2 (ACE2) to capture SARS-CoV-2 viral particles.
  • Employed a dual-reporter flow cytometry system with R-phycoerythrin (PE) and Brilliant Violet 421 (BV421) labeled detection reagents.
  • Applied antibody fragments targeting different Spike (S1) protein epitopes for proof-of-concept validation.

Main Results:

  • Achieved triple detection of viral particles with high specificity, confirming the capture of intact SARS-CoV-2.
  • Generated dose-dependency curves with good assay performance (replicate coefficient variances <14%).
  • Demonstrated parallel detection of two distinct viral surface protein epitopes.

Conclusions:

  • The developed flow cytometry protocol enables high-multiplex, high-throughput profiling of enveloped virus surface proteins.
  • The assay can reliably detect active, intact viral particles and assess antibody/antiviral drug specificity.
  • This method holds potential for applications beyond SARS-CoV-2, including other extracellular vesicles and bioparticles.