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A novel preliminary metabolomic panel for IHD diagnostics and pathogenesis
S S Markin1, E A Ponomarenko2, Yu A Romashova2
1Institute of Biomedical Chemistry, Moscow, Russia, 119121. phospholipovit@ibmc.msk.ru.
Insights
This study identifies key blood metabolites for diagnosing ischemic heart disease (IHD) using machine learning. Machine learning models accurately predicted IHD, highlighting specific metabolites for potential diagnostic use.
Area of Science:
- Biochemistry
- Computational Biology
- Cardiology
Background:
- Cardiovascular disease (CVD) is a leading global cause of mortality, with ischemic heart disease (IHD) accounting for a significant portion.
- Accurate and early diagnostics for IHD are crucial for effective patient management and improved outcomes.
Purpose of the Study:
- To investigate the potential of targeted metabolomic profiling combined with machine learning for diagnosing IHD.
- To identify specific plasma metabolites and metabolic pathways associated with IHD.
Main Methods:
- Quantitative analysis of 87 endogenous plasma metabolites in 112 subjects (76 IHD patients, 36 controls).
- Development of a novel age-adjustment correction method for metabolomics data.
- Application of various machine learning algorithms (logistic regression, SVM, decision trees, random forest, gradient boosting) for IHD diagnostic model development.
Main Results:
- Identified 36 significantly altered metabolites in IHD patients, including changes in amino acids, acylcarnitines, and tryptophan catabolism pathways.
- The random forest model achieved the highest diagnostic accuracy with an Area Under the Curve (AUC) of 0.98.
- Key metabolites such as Norepinephrine, Xanthurenic acid, Serotonin, and Phenylalanine were identified as significant predictors of IHD.
Conclusions:
- Targeted metabolomic profiling coupled with machine learning offers a promising approach for IHD diagnostics.
- A panel of identified metabolites may serve as a novel preliminary biomarker for IHD detection.
- Further validation studies are warranted to confirm the clinical utility of these findings.
Abstract:
Cardiovascular disease (CVD) represents one of the main causes of mortality worldwide and nearly a half of it is related to ischemic heart disease (IHD). The article represents a comprehensive study on the diagnostics of IHD through the targeted metabolomic profiling and machine learning techniques. A total of 112 subjects were enrolled in the study, consisting of 76 IHD patients and 36 non-CVD subjects. Metabolomic profiling was conducted, involving the quantitative analysis of 87 endogenous metabolites in plasma. A novel regression method of age-adjustment correction of metabolomics data was developed. We identified 36 significantly changed metabolites which included increased cystathionine and dimethylglycine and the decreased ADMA and arginine. Tryptophan catabolism pathways showed significant alterations with increased levels of serotonin, intermediates of the kynurenine pathway and decreased intermediates of indole pathway. Amino acid profiles indicated elevated branched-chain amino acids and increased amino acid ratios. Short-chain acylcarnitines were reduced, while long-chain acylcarnitines were elevated. Based on these metabolites data, machine learning algorithms: logistic regression, support vector machine, decision trees, random forest, and gradient boosting, were used for IHD diagnostic models. Random forest demonstrated the highest accuracy with an AUC of 0.98. The metabolites Norepinephrine; Xanthurenic acid; Anthranilic acid; Serotonin; C6-DC; C14-OH; C16; C16-OH; GSG; Phenylalanine and Methionine were found to be significant and may serve as a novel preliminary panel for IHD diagnostics. Further studies are needed to confirm these findings.
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