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Updated: Jul 4, 2025

Author Spotlight: Quantitative Detection of DNA Protein Crosslinks and Their Post-Translational Modifications
Published on: April 21, 2023
DNA damage-induced allosteric activation of protein phosphatase PP1:NIPP1 through Src kinase-induced circularization
Dan Wu1, Gerd Van der Hoeven1, Zander Claes1
1Laboratory of Biosignaling & Therapeutics, KU Leuven Department of Cellular and Molecular Medicine, University of Leuven, Belgium.
Abstract:
Protein phosphatase-1 (PP1) complexed to nuclear inhibitor of PP1 (NIPP1) limits DNA repair through dephosphorylation of NIPP1-recruited substrates. However, the PP1:NIPP1 holoenzyme is completely inactive under basal conditions, hinting at a DNA damage-regulated activation mechanism. Here, we report that DNA damage caused the activation of PP1:NIPP1 after a time delay of several hours through phosphorylation of NIPP1 at the C-terminal tyrosine 335 (Y335) by a Src-family kinase. PP1:NIPP1 activation partially resulted from the dissociation of the C terminus of NIPP1 from the active site of PP1. In addition, the released Y335-phosphorylated C terminus interacted with the N terminus of NIPP1 to enhance substrate recruitment by the flanking forkhead-associated (FHA) domain. Constitutive activation of PP1:NIPP1 by knock-in of a phospho-mimicking (Y335E) NIPP1 mutant led to the hypo-phosphorylation of FHA ligands and an accumulation of DNA double-strand breaks. Our data indicate that PP1:NIPP1 activation through circularization of NIPP1 is a late response to DNA damage that contributes to the timely recovery from damage repair.
Insights
DNA damage activates the protein phosphatase-1 (PP1): nuclear inhibitor of PP1 (NIPP1) complex hours later. This activation, driven by NIPP1 phosphorylation, is crucial for timely DNA repair recovery.
Area of Science:
- Molecular Biology
- Cellular Biology
- Biochemistry
Background:
- Protein phosphatase-1 (PP1) and its inhibitor NIPP1 form a complex that regulates DNA repair by dephosphorylating specific substrates.
- The PP1:NIPP1 holoenzyme is inactive under normal conditions, suggesting a DNA damage-induced activation mechanism.
Purpose of the Study:
- To elucidate the mechanism by which the PP1:NIPP1 complex is activated in response to DNA damage.
- To investigate the role of NIPP1 phosphorylation in regulating PP1:NIPP1 activity and DNA repair.
Main Methods:
- Investigated DNA damage-induced activation of PP1:NIPP1.
- Utilized Src-family kinase for NIPP1 phosphorylation at tyrosine 335 (Y335).
- Employed phospho-mimicking NIPP1 mutant (Y335E) to study constitutive activation.
Main Results:
- DNA damage triggers PP1:NIPP1 activation after a several-hour delay via NIPP1 phosphorylation at Y335 by a Src-family kinase.
- Activation involves dissociation of NIPP1's C terminus from PP1's active site and enhanced substrate recruitment.
- Constitutive PP1:NIPP1 activation leads to hypo-phosphorylation of substrates and accumulation of DNA double-strand breaks.
Conclusions:
- PP1:NIPP1 activation, mediated by NIPP1 circularization, is a delayed response to DNA damage.
- This activation mechanism is essential for the timely recovery from DNA damage repair.
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