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The role of TAOK3 in cancer progression and development as a prognostic marker: A pan-cancer analysis study
Glowi Alasiri1, Bahauddeen Alrfaei2,3, Ali M Alaseem4
1Department of Biochemistry, College of Medicine, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 5701, Saudi Arabia.
Abstract:
The protein kinase TAOK3, belongs to the MAP kinase family, is one of three closely related members, namely TAOK1, TAOK2, and TAOK3. We performed a pan-cancer investigation of TAOK3 across different cancer types, including uterine carcinosarcoma, adenocarcinoma of the stomach and pancreas, and endometrial carcinoma of the uterus, to better understand TAOK3's role in cancer. In at least 16 types of cancer, our findings indicate that TAOK3 expression levels differ considerably between normal and tumor tissues. In addition, our study is the first to identify the oncogenic role of TAOK3 locus S331 and S471 in renal clear cell carcinoma, Glioblastoma Multiforme, hepatocellular carcinoma, Lung adenocarcinoma, and Pancreatic adenocarcinoma, indicating their involvement in cancer progression. In addition, our data analysis indicates that copy number variation is the most prevalent form of mutation in the TAOK3 gene, and that there is a negative correlation between TAOK3 mRNA and DNA promoter methylation. Moreover, our analysis suggests that TAOK3 may serve as a prognostic marker for several kinds of cancer, including Colon adenocarcinoma, renal clear cell carcinoma, Lower Grade Glioma, Lung adenocarcinoma, Mesothelioma, and hepatocellular carcinoma. In addition, our research on signature cancer genes has uncovered a positive association between TAOK3 and SMAD2, SMAD4, and RNF168 in most of the malignancies we have examined. TAOK3 is also correlated with the frequency of mutations and microsatellite instability in four types of cancer. Numerous immune-related genes are closely associated with TAOK3 levels in numerous malignancies. TAOK3 expression is positively correlated with immune infiltrates, which include activated CD4 T cells, CD8 T cells, and type 2T helper cells. Our pan-cancer analysis of TAOK3 provides vital insight into its potential role across a variety of cancer types.
Insights
The protein kinase TAOK3 plays a significant role in various cancers, showing altered expression and potential as a prognostic marker. Its oncogenic functions and association with immune cells highlight its importance in cancer progression.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- TAOK3 is a member of the MAP kinase family, with limited understanding of its role in cancer.
- Previous research has not fully explored the pan-cancer implications of TAOK3.
Purpose of the Study:
- To conduct a comprehensive pan-cancer investigation of the protein kinase TAOK3.
- To identify the oncogenic role and prognostic potential of TAOK3 across diverse cancer types.
Main Methods:
- Pan-cancer analysis of TAOK3 expression in normal versus tumor tissues.
- Investigation of TAOK3 locus mutations (S331, S471) and copy number variations.
- Correlation analysis with gene methylation, mutations, microsatellite instability, and immune infiltrates.
Main Results:
- TAOK3 expression significantly differs in at least 16 cancer types.
- The oncogenic role of TAOK3 at S331 and S471 was identified in specific cancers like renal clear cell carcinoma and glioblastoma.
- Copy number variation is the predominant mutation type, with negative correlation between TAOK3 mRNA and promoter methylation.
- TAOK3 shows potential as a prognostic marker for several cancers and is associated with immune cell infiltration.
Conclusions:
- TAOK3 is implicated in the progression of various cancers, with distinct oncogenic roles in specific tumor types.
- TAOK3 serves as a potential prognostic biomarker and is linked to immune microenvironment modulation.
- This pan-cancer analysis provides critical insights into TAOK3's multifaceted role in oncology.
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