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Updated: Jul 4, 2025

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
The levels of p53 govern the hierarchy of DNA damage tolerance pathway usage
Bryan A Castaño1, Sabrina Schorer1, Yitian Guo1
1Department of Obstetrics and Gynecology, Ulm University, Ulm 89075, Germany.
Abstract:
It is well-established that, through canonical functions in transcription and DNA repair, the tumor suppressor p53 plays a central role in safeguarding cells from the consequences of DNA damage. Recent data retrieved in tumor and stem cells demonstrated that p53 also carries out non-canonical functions when interacting with the translesion synthesis (TLS) polymerase iota (POLι) at DNA replication forks. This protein complex triggers a DNA damage tolerance (DDT) mechanism controlling the DNA replication rate. Given that the levels of p53 trigger non-binary rheostat-like functions in response to stress or during differentiation, we explore the relevance of the p53 levels for its DDT functions at the fork. We show that subtle changes in p53 levels modulate the contribution of some DDT factors including POLι, POLη, POLζ, REV1, PCNA, PRIMPOL, HLTF and ZRANB3 to the DNA replication rate. Our results suggest that the levels of p53 are central to coordinate the balance between DDT pathways including (i) fork-deceleration by the ZRANB3-mediated fork reversal factor, (ii) POLι-p53-mediated fork-slowing, (iii) POLι- and POLη-mediated TLS and (iv) PRIMPOL-mediated fork-acceleration. Collectively, our study reveals the relevance of p53 protein levels for the DDT pathway choice in replicating cells.
Insights
Tumor suppressor p53
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- The tumor suppressor p53 is crucial for DNA repair and transcription.
- p53 also has non-canonical functions at DNA replication forks, interacting with translesion synthesis (TLS) polymerase iota (POLι).
- This interaction initiates a DNA damage tolerance (DDT) mechanism that regulates DNA replication rate.
Purpose of the Study:
- To investigate the role of p53 levels in its DNA damage tolerance (DDT) functions at replication forks.
- To understand how varying p53 levels influence the balance of different DDT pathways.
Main Methods:
- Analysis of p53's interaction with TLS polymerases and other DDT factors.
- Assessing the impact of altered p53 levels on DNA replication rate and pathway choice.
Main Results:
- Subtle changes in p53 levels modulate the contribution of key DDT factors (POLι, POLη, POLζ, REV1, PCNA, PRIMPOL, HLTF, ZRANB3) to replication rate.
- p53 levels dictate the coordination of distinct DDT pathways: fork deceleration, fork slowing, TLS, and fork acceleration.
Conclusions:
- p53 protein levels are critical regulators of DNA damage tolerance pathway selection in replicating cells.
- This highlights a rheostat-like function of p53 in response to cellular stress and replication dynamics.
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