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Published on: October 18, 2024
The GATOR2 complex maintains lysosomal-autophagic function by inhibiting the protein degradation of MiT/TFEs
Shu Yang1, Chun-Yuan Ting1, Mary A Lilly1
1Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Abstract:
Lysosomes are central to metabolic homeostasis. The microphthalmia bHLH-LZ transcription factors (MiT/TFEs) family members MITF, TFEB, and TFE3 promote the transcription of lysosomal and autophagic genes and are often deregulated in cancer. Here, we show that the GATOR2 complex, an activator of the metabolic regulator TORC1, maintains lysosomal function by protecting MiT/TFEs from proteasomal degradation independent of TORC1, GATOR1, and the RAG GTPase. We determine that in GATOR2 knockout HeLa cells, members of the MiT/TFEs family are ubiquitylated by a trio of E3 ligases and are degraded, resulting in lysosome dysfunction. Additionally, we demonstrate that GATOR2 protects MiT/TFE proteins in pancreatic ductal adenocarcinoma and Xp11 translocation renal cell carcinoma, two cancers that are driven by MiT/TFE hyperactivation. In summary, we find that the GATOR2 complex has independent roles in TORC1 regulation and MiT/TFE protein protection and thus is central to coordinating cellular metabolism with control of the lysosomal-autophagic system.
Insights
The GATOR2 complex protects key proteins (MiT/TFEs) from degradation, maintaining lysosome function. This discovery reveals GATOR2
Area of Science:
- Cellular Biology
- Molecular Biology
- Metabolic Regulation
Background:
- Lysosomes are crucial for cellular metabolic homeostasis.
- Microphthalmia bHLH-LZ transcription factors (MiT/TFEs) regulate lysosomal and autophagic genes.
- MiT/TFEs are frequently dysregulated in various cancers.
Purpose of the Study:
- To investigate the role of the GATOR2 complex in maintaining lysosomal function.
- To determine the mechanism by which GATOR2 influences MiT/TFEs.
- To explore GATOR2's relevance in MiT/TFE-driven cancers.
Main Methods:
- Utilized GATOR2 knockout HeLa cells to study MiT/TFE degradation.
- Investigated ubiquitylation of MiT/TFEs by E3 ligases.
- Analyzed GATOR2's protective role in cancer cell lines (pancreatic ductal adenocarcinoma, Xp11 translocation renal cell carcinoma).
Main Results:
- GATOR2 protects MiT/TFEs from proteasomal degradation independently of TORC1.
- Loss of GATOR2 leads to MiT/TFE ubiquitylation and degradation, causing lysosome dysfunction.
- GATOR2 protects MiT/TFE proteins in cancers driven by MiT/TFE hyperactivation.
Conclusions:
- GATOR2 complex plays an independent role in regulating TORC1.
- GATOR2 is essential for protecting MiT/TFE proteins from degradation.
- GATOR2 is central to coordinating cellular metabolism and the lysosomal-autophagic system.
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