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Updated: Jul 4, 2025

Understanding the Impact of Temperate Bacteriophages on Their Lysogens Through Transcriptomics
Published on: January 5, 2024
An intramolecular cross-talk in D29 mycobacteriophage endolysin governs the lytic cycle and phage-host population
1Microbiology and Molecular Biology Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER), Bhopal 462066, Madhya Pradesh, India.
Abstract:
D29 mycobacteriophage encodes LysA endolysin, which mediates mycobacterial host cell lysis by targeting its peptidoglycan layer, thus projecting itself as a potential therapeutic. However, the regulatory mechanism of LysA during the phage lytic cycle remains ill defined. Here, we show that during D29 lytic cycle, structural and functional regulation of LysA not only orchestrates host cell lysis but also is critical for maintaining phage-host population dynamics by governing various phases of lytic cycle. We report that LysA exists in two conformations, of which only one is active, and the protein undergoes a host peptidoglycan-dependent conformational switch to become active for carrying out endogenous host cell lysis. D29 maintains a pool of inactive LysA, allowing complete assembly of phage progeny, thus helping avoid premature host lysis. In addition, we show that the switch reverses after lysis, thus preventing exogenous targeting of bystanders, which otherwise negatively affects phage propagation in the environment.
Insights
The D29 phage
Area of Science:
- Microbiology and Virology
- Bacteriophage Biology
- Molecular Mechanisms of Viral Replication
Background:
- Mycobacteriophage D29 utilizes the LysA endolysin for host cell lysis, targeting the peptidoglycan layer.
- LysA shows potential as a therapeutic agent against mycobacterial infections.
- The precise regulatory mechanisms governing LysA activity during the phage lytic cycle are not fully understood.
Purpose of the Study:
- To elucidate the structural and functional regulation of LysA during the D29 phage lytic cycle.
- To investigate how LysA activity influences phage-host population dynamics and the lytic cycle phases.
- To determine the conformational states of LysA and the triggers for its activation and inactivation.
Main Methods:
- Investigating LysA protein conformations and activity.
- Analyzing LysA's interaction with host peptidoglycan.
- Studying the timing of LysA activation and inactivation relative to phage progeny assembly and host lysis.
- Assessing the impact of LysA regulation on phage propagation in environmental settings.
Main Results:
- LysA exists in two conformations; only one is enzymatically active.
- LysA activation is dependent on a conformational switch triggered by host peptidoglycan.
- D29 phage maintains an inactive LysA pool, enabling complete phage assembly before host lysis.
- LysA activity is reversible post-lysis, preventing targeting of surrounding bacterial populations.
Conclusions:
- Structural and functional regulation of LysA is crucial for orchestrating host cell lysis and maintaining phage-host population dynamics.
- Peptidoglycan-dependent conformational switching allows for controlled lysis, balancing phage reproduction and propagation.
- Reversible inactivation of LysA post-lysis protects bystander bacteria, enhancing phage survival and spread in the environment.
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Lysogenic Cycle of Bacteriophages
Lytic Cycle of Bacteriophages
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