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Co-immunoprecipitation Assay Using Endogenous Nuclear Proteins from Cells Cultured Under Hypoxic Conditions
Published on: August 2, 2018
Discovery of the First-in-Class Inhibitors of Hypoxia Up-Regulated Protein 1 (HYOU1) Suppressing Pathogenic
Dimitra Papadopoulou1, Vasiliki Mavrikaki2,3, Filippos Charalampous1
1Institute for Bioinnovation, Biomedical Sciences Research Center "Alexander Fleming", 16672, Vari, Greece.
Abstract:
Fibroblasts are key regulators of inflammation, fibrosis, and cancer. Targeting their activation in these complex diseases has emerged as a novel strategy to restore tissue homeostasis. Here, we present a multidisciplinary lead discovery approach to identify and optimize small molecule inhibitors of pathogenic fibroblast activation. The study encompasses medicinal chemistry, molecular phenotyping assays, chemoproteomics, bulk RNA-sequencing analysis, target validation experiments, and chemical absorption, distribution, metabolism, excretion and toxicity (ADMET)/pharmacokinetic (PK)/in vivo evaluation. The parallel synthesis employed for the production of the new benzamide derivatives enabled us to a) pinpoint key structural elements of the scaffold that provide potent fibroblast-deactivating effects in cells, b) discriminate atoms or groups that favor or disfavor a desirable ADMET profile, and c) identify metabolic "hot spots". Furthermore, we report the discovery of the first-in-class inhibitor leads for hypoxia up-regulated protein 1 (HYOU1), a member of the heat shock protein 70 (HSP70) family often associated with cellular stress responses, particularly under hypoxic conditions. Targeting HYOU1 may therefore represent a potentially novel strategy to modulate fibroblast activation and treat chronic inflammatory and fibrotic disorders.
Insights
Researchers developed new small molecule inhibitors to target fibroblast activation, a key factor in inflammation, fibrosis, and cancer. This study identified novel inhibitors for HYOU1, a protein linked to cellular stress, offering a new therapeutic strategy.
Area of Science:
- Biochemistry
- Pharmacology
- Molecular Biology
Background:
- Fibroblasts play a critical role in regulating inflammation, fibrosis, and cancer.
- Targeting fibroblast activation is a promising strategy for restoring tissue homeostasis in complex diseases.
Purpose of the Study:
- To identify and optimize small molecule inhibitors of pathogenic fibroblast activation using a multidisciplinary approach.
- To discover first-in-class inhibitor leads for hypoxia up-regulated protein 1 (HYOU1).
Main Methods:
- Medicinal chemistry, parallel synthesis of benzamide derivatives.
- Molecular phenotyping, chemoproteomics, bulk RNA-sequencing.
- ADMET/PK/in vivo evaluation and target validation.
Main Results:
- Identified key structural elements for potent fibroblast deactivation and optimized ADMET profiles.
- Discovered first-in-class inhibitor leads targeting HYOU1, a heat shock protein 70 (HSP70) family member.
- Characterized metabolic 'hot spots' in benzamide derivatives.
Conclusions:
- Small molecule inhibitors targeting fibroblast activation, particularly HYOU1, show potential for treating chronic inflammatory and fibrotic disorders.
- This multidisciplinary approach successfully identified novel therapeutic leads for complex diseases involving fibroblastpathways.
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