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Human-airway surface mesh smoothing based on graph convolutional neural networks.

Thao Thi Ho1, Minh Tam Tran1, Xinguang Cui2

  • 1School of Mechanical Engineering, Kyungpook National University, 80 Daehak-ro, Buk-gu, Daegu 41566, South Korea.

Computer Methods and Programs in Biomedicine
|February 11, 2024
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Summary

This study introduces an unsupervised airway-mesh-smoothing learning (AMSL) method to accurately preserve 3D airway geometry from CT scans for computational fluid dynamics (CFD) simulations. AMSL successfully smoothed airway meshes without shrinkage, improving CFD accuracy for airflow and pressure predictions.

Keywords:
Computational fluid dynamicsComputed tomographyDeep mesh priorGraph convolutional neural networkSurface mesh smoothing

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Area of Science:

  • Medical imaging and computational modeling.
  • Development of advanced algorithms for biomedical applications.

Background:

  • Accurate airway geometry is crucial for computational fluid dynamics (CFD) simulations based on computed tomography (CT) images.
  • Existing surface smoothing methods often cause shrinkage and information loss in smaller airway branches.

Purpose of the Study:

  • To introduce an unsupervised airway-mesh-smoothing learning (AMSL) method.
  • To preserve the original 3D airway geometry for accurate CT-image-based CFD simulations.

Main Methods:

  • Jointly training two graph convolutional neural networks (GCNNs) to filter vertex positions and face normal vectors.
  • Regularizing loss functions for reproducibility, smoothness, and consistency.
  • Utilizing a deep mesh prior model for self-similar mesh restoration without large datasets.

Main Results:

  • The AMSL method outperformed conventional and state-of-the-art deep learning methods in 18 of 20 benchmark problems.
  • AMSL successfully smoothed 20 airway datasets, maintaining original airway diameters, especially in smaller branches.
  • CFD simulations using AMSL-generated airways showed reduced pressure drop and wall shear stress compared to traditional methods.

Conclusions:

  • The AMSL method accurately reproduces airway branch diameters without shrinkage, preserving critical details of smaller airways.
  • Accurate airway geometry smoothing is essential for reliable flow property estimations in CFD simulations.