PANoptosis subtypes predict prognosis and immune efficacy in gastric cancer

Zitao Liu1, Liang Sun1, Xingyu Peng1

  • 1Department of General Surgery, The Second Affiliated Hospital of Nanchang University, 1 MinDe Road, Nanchang, 330006, Jiangxi, People's Republic of China.

Insights

PANoptosis, an inflammatory cell death, is linked to gastric cancer prognosis. A new PANoptosis-related risk score (PANS) predicts patient outcomes, immune response, and chemotherapy sensitivity, with KRT7 validated as a therapeutic target.

Area of Science:

  • Cell Death Research
  • Cancer Biology
  • Immunology

Background:

  • PANoptosis is a distinct inflammatory programmed cell death pathway regulated by the PANoptosome, sharing features with pyroptosis, apoptosis, and necroptosis.
  • The precise role of PANoptosis and its associated molecular mechanisms in gastric cancer (GC) remains largely uncharacterized.
  • Understanding PANoptosis in GC is crucial for developing novel diagnostic and therapeutic strategies.

Purpose of the Study:

  • To investigate the prognostic and tumor microenvironment (TME) variations among different PANoptosis subtypes in gastric cancer.
  • To develop and validate a PANoptosis-related risk score (PANS) for predicting GC prognosis, immune efficacy, and chemotherapeutic drug sensitivity.
  • To experimentally validate the role of Keratin 7 (KRT7) in gastric cancer progression.

Main Methods:

  • Patients were classified into PANoptosis subtypes based on PANoptosome gene expression.
  • Systematic analysis of prognosis and TME features across subtypes.
  • Development and validation of a PANoptosis-related risk score (PANS).
  • Correlation analysis of PANS with GC prognosis, TME, immunotherapy, and chemotherapy sensitivity.
  • In vitro experiments to assess the functional role of KRT7 in GC cells.

Main Results:

  • Two PAN subtypes (PANcluster A and B) were identified, with PANcluster A exhibiting high PANoptosome gene expression, favorable prognosis, anti-tumor immune cell infiltration, and immunotherapy sensitivity.
  • The developed PANS effectively predicted GC prognosis and immune efficacy. Low PANS scores correlated with good prognosis, high tumor mutation burden (TMB), high microsatellite instability (MSI), low tumor purity, and immunotherapy sensitivity.
  • KRT7 was found to be highly expressed in GC, and its knockdown significantly inhibited GC cell proliferation and migration.

Conclusions:

  • PANoptosis signatures can effectively characterize TME features in gastric cancer and predict patient prognosis and immunotherapy response.
  • The PANS serves as a valuable tool for predicting clinical outcomes and guiding therapeutic strategies, including immunotherapy and chemotherapy selection.
  • KRT7 represents a potential therapeutic target for gastric cancer, with its inhibition showing anti-tumor effects.